Protein profile

KP13_19569

Betaine aldehyde dehydrogenase

Genome: KpKP13

Gene: betB ANJ86619.1 Structure source: Experimental + ColabFold UniProt A0A0H3GTN1
Amino acids 490
Annotations 6
Features 20
PDB binders 11
Druggability 0.692

Overview

Basic information about this protein and its source genome.

Accession
KP13_19569
Gene
betB ANJ86619.1
Status
annotated
Amino acids
490
Structure source
Experimental + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
53.061
Human E-value
3.72e-08
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
44.375
DEG E-value
6.9e-139
Localization
Cytoplasmic
ColabFold pLDDT
98.49

Selected Druggability evidence

PDB experimental structure

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.692
Structure 7SWK
Pocket Pocket 2
P2Rank 0.958
Structure 7SWK
Pocket Pocket 1
ColabFold model
FPocket 0.95 · Pocket 3
P2Rank 0.988 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 92 / 4744 genomes with a hit
Normalized 0.019

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 5 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

5
  • GO:0019285 The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline.
  • GO:0046872 Binding to a metal ion.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0008802 Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+.

Sequence Features

Domain/signature hits from InterPro and related databases.

20 records
Show feature table
Start End DB Term Name
255 448 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
255 448 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
4 490 Hamap MF_00804 Betaine aldehyde dehydrogenase [betB].
4 490 InterPro IPR011264 Betaine aldehyde dehydrogenase
255 448 FunFam G3DSA:3.40.309.10:FF:000014 NAD/NADP-dependent betaine aldehyde dehydrogenase
10 477 NCBIfam TIGR01804 betaine-aldehyde dehydrogenase
10 477 InterPro IPR011264 Betaine aldehyde dehydrogenase
279 290 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
279 290 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
11 279 FunFam G3DSA:3.40.605.10:FF:000007 NAD/NADP-dependent betaine aldehyde dehydrogenase
4 483 SUPERFAMILY SSF53720 ALDH-like
4 483 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
17 479 Pfam PF00171 Aldehyde dehydrogenase family
17 479 InterPro IPR015590 Aldehyde dehydrogenase domain
10 478 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
10 478 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
7 482 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED
26 484 CDD cd07090 ALDH_F9_TMBADH
251 258 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
251 258 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 7SWK
X-ray 1.80 Å A,B
100.0% 1-490
Viewing
ColabFold KP13_19569
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
10 0.903
6 0.582

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 43.07 0.969
2 42.36 0.968
3 29.12 0.929
4 29.11 0.929
5 26.32 0.913

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

145 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
7PE Q9HTJ1 310.4 Da LogP 0.10 TPSA 75.6 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCCOCCO
DTT Q9HTJ1 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
KXT P47895 270.3 Da LogP 4.67 TPSA 17.3 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc3nc(cn3c2)c4ccccc4
N4Q P47895 360.4 Da LogP 4.69 TPSA 45.0 ✓ Ro5 ✓ Clean COc1ccc(cc1)c2cn3cc(ccc3n2)c4cc(cc(c4)OC)OC
N98 P47895 373.4 Da LogP 3.58 TPSA 75.0 ✓ Ro5 ✓ Clean COC(=O)c1cc(nc2n1nc(c2)c3ccccc3)c4ccc5c(c4)OCO5
NW8 P47895 304.8 Da LogP 5.32 TPSA 17.3 1 viol. ✓ Clean c1ccc(cc1)c2cn3cccc(c3n2)c4ccc(cc4)Cl
PE4 Q9HTJ1 354.4 Da LogP 0.11 TPSA 84.8 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCCOCCOCCO
REA P47895 300.4 Da LogP 5.60 TPSA 37.3 1 viol. ✓ Clean CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)…
SIN Q3JLL8 118.1 Da LogP -0.06 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)O
TOE Q9HTJ1 164.2 Da LogP -0.34 TPSA 47.9 ✓ Ro5 ✓ Clean COCCOCCOCCO
TXE Q9HTJ1 667.5 Da LogP -2.95 TPSA 317.6 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.