Protein profile

KP13_03489

putative dTDP (deoxythimodone diphosphates)-4-dehydrorhamnose 3,5-epimerase, RmlC

Genome: KpKP13

Gene: AHE45866.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GJN1
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Amino acids 121
Annotations 0
Features 7
PDB binders 0
Druggability 0.905

Overview

Basic information about this protein and its source genome.

Accession
KP13_03489
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE45866.1
Status
annotated
Amino acids
121
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
96.02

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.905
Structure A0A0H3GJN1
Pocket Pocket 1
P2Rank 0.813
Structure A0A0H3GJN1
Pocket Pocket 1
ColabFold model
FPocket 0.369 · Pocket 1
P2Rank 0.809 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 11 / 4744 genomes with a hit
Normalized 0.002

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

7 records
Show feature table
Start End DB Term Name
7 120 PANTHER PTHR40943 CYTOPLASMIC PROTEIN-RELATED
25 115 SUPERFAMILY SSF51182 RmlC-like cupins
25 115 InterPro IPR011051 RmlC-like cupin domain superfamily
12 115 Gene3D G3DSA:2.60.120.10 Jelly Rolls
12 115 InterPro IPR014710 RmlC-like jelly roll fold
41 114 Pfam PF05899 EutQ-like cupin domain
41 114 InterPro IPR008579 (S)-ureidoglycine aminohydrolase, cupin domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJN1
AlphaFold — — full sequence — Viewing
ColabFold KP13_03489
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.905

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 19.28 0.837
2 3.63 0.136