Protein profile

KP13_03607

Copper-exporting P-type ATPase A

Genome: KpKP13

Gene: AHE45950.1 copA Structure source: AlphaFold + ColabFold UniProt A0A0H3GJB4
Amino acids 851
Annotations 17
Features 87
PDB binders 6
Druggability 0.82

Overview

Basic information about this protein and its source genome.

Accession
KP13_03607
Gene
AHE45950.1 copA
Status
annotated
Amino acids
851
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
41.284
Human E-value
1.09e-10
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
85.21

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.82
Structure A0A0H3GJB4
Pocket Pocket 33
P2Rank 0.971
Structure A0A0H3GJB4
Pocket Pocket 1
ColabFold model
FPocket 0.965 · Pocket 1
P2Rank 0.758 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 116 / 4744 genomes with a hit
Normalized 0.024

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 16 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

16
  • GO:0006812 The directed movement of a monoatomic cation, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0046872 Binding to a metal ion.
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0019829 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005507 Binding to a copper (Cu) ion.
  • GO:0043682 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out).
  • GO:0140581 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu+(in) = ADP + phosphate + Cu+(out).
  • GO:0060003 The directed movement of copper ions out of a cell or organelle.
  • GO:0055070 Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
  • GO:0075523 A process which occurs during viral translation, which involves a translational recoding mechanism called programmed ribosomal frameshifting. This causes the ribosome to alter its reading of the mRNA to an a different open reading frame to produce alternate viral proteins.

Sequence Features

Domain/signature hits from InterPro and related databases.

87 records
Show feature table
Start End DB Term Name
1 201 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
453 475 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
269 844 NCBIfam TIGR01525 heavy metal translocating P-type ATPase
269 844 InterPro IPR027256 P-type ATPase, subfamily IB
256 266 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
158 178 PRINTS PR00943 Copper-transporting ATPase signature
254 273 PRINTS PR00943 Copper-transporting ATPase signature
521 536 PRINTS PR00943 Copper-transporting ATPase signature
712 729 PRINTS PR00943 Copper-transporting ATPase signature
459 473 PRINTS PR00943 Copper-transporting ATPase signature
22 847 PANTHER PTHR43520 ATP7, ISOFORM B
267 289 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
301 319 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
116 179 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
116 179 InterPro IPR006121 Heavy metal-associated domain, HMA
339 436 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
339 436 InterPro IPR008250 P-type ATPase, A domain superfamily
453 475 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
819 841 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
530 785 Gene3D G3DSA:3.40.50.1000 -
530 785 InterPro IPR023214 HAD superfamily
820 841 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
303 798 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
303 798 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
505 794 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
202 222 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
519 786 SFLD SFLDF00027 p-type atpase
519 786 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
540 546 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
540 546 InterPro IPR018303 P-type ATPase, phosphorylation site
233 250 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
480 502 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
549 668 FunFam G3DSA:3.40.1110.10:FF:000036 Copper-exporting P-type ATPase
119 179 CDD cd00371 HMA
119 179 InterPro IPR006121 Heavy metal-associated domain, HMA
324 440 FunFam G3DSA:2.70.150.10:FF:000020 Copper-exporting P-type ATPase A
842 851 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
21 82 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
21 82 InterPro IPR006121 Heavy metal-associated domain, HMA
22 84 Gene3D G3DSA:3.30.70.100 -
22 84 FunFam G3DSA:3.30.70.100:FF:000032 Copper-exporting P-type ATPase
536 841 SUPERFAMILY SSF56784 HAD-like
536 841 InterPro IPR036412 HAD-like superfamily
795 814 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
223 233 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
118 182 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
118 182 InterPro IPR036163 Heavy metal-associated domain superfamily
337 517 Pfam PF00122 E1-E2 ATPase
549 668 Gene3D G3DSA:3.40.1110.10 -
549 668 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
290 300 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
122 176 Pfam PF00403 Heavy-metal-associated domain
122 176 InterPro IPR006121 Heavy metal-associated domain, HMA
26 79 Pfam PF00403 Heavy-metal-associated domain
26 79 InterPro IPR006121 Heavy metal-associated domain, HMA
308 812 NCBIfam TIGR01494 HAD-IC family P-type ATPase
308 812 InterPro IPR001757 P-type ATPase
535 749 Pfam PF00702 haloacid dehalogenase-like hydrolase
386 400 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
735 754 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
758 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
682 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
660 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
538 552 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
119 181 Gene3D G3DSA:3.30.70.100 -
320 452 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
324 440 Gene3D G3DSA:2.70.150.10 -
206 223 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
119 181 FunFam G3DSA:3.30.70.100:FF:000030 Copper-exporting P-type ATPase
519 786 SFLD SFLDS00003 Haloacid Dehalogenase
204 846 CDD cd02094 P-type_ATPase_Cu-like
21 85 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
21 85 InterPro IPR036163 Heavy metal-associated domain superfamily
300 319 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
795 814 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
250 844 NCBIfam TIGR01511 copper-translocating P-type ATPase
234 255 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
122 151 ProSitePatterns PS01047 Heavy-metal-associated domain.
122 151 InterPro IPR017969 Heavy-metal-associated, conserved site
27 56 ProSitePatterns PS01047 Heavy-metal-associated domain.
27 56 InterPro IPR017969 Heavy-metal-associated, conserved site
476 480 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
481 504 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
271 290 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
24 82 CDD cd00371 HMA
24 82 InterPro IPR006121 Heavy metal-associated domain, HMA
815 819 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJB4
AlphaFold full sequence Viewing
ColabFold KP13_03607
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
33 0.82
24 0.292

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 17.39 0.801
2 6.08 0.301
3 5.18 0.24
4 3.8 0.147
5 3.06 0.101

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
9UX P35670 292.0 Da LogP -0.02 TPSA 34.1 ✓ Ro5 ✓ Clean O=[MoH2]1S[MoH2](=O)S1
ACP O29777 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ALF Q3YW59 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
BEF Q3YW59 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
MGF Q5ZWR1 81.3 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-](F)F
NH4 Q9SZC9 18.0 Da LogP 0.38 TPSA 36.5 ✓ Ro5 ✓ Clean [NH4+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.