Protein profile

KP13_03645

Putative arabinogalactan oligomer transport system permease protein ganQ

Genome: KpKP13

Gene: ganQ AHE45985.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GJ82
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Amino acids 283
Annotations 5
Features 31
PDB binders 0
Druggability 0.648

Overview

Basic information about this protein and its source genome.

Accession
KP13_03645
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
ganQ AHE45985.1
Status
annotated
Amino acids
283
Structure source
AlphaFold + ColabFold
GO
GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it. GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. GO:0015423 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + maltose(out) = ADP + phosphate + maltose(in). GO:0042956 The directed movement of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, across a membrane.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
90.57

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.648
Structure A0A0H3GJ82
Pocket Pocket 9
P2Rank 0.038
Structure A0A0H3GJ82
Pocket Pocket 1
ColabFold model
FPocket 0.954 · Pocket 1
P2Rank 0.051 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 59 / 4744 genomes with a hit
Normalized 0.012

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015423 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + maltose(out) = ADP + phosphate + maltose(in).
  • GO:0042956 The directed movement of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, across a membrane.

Sequence Features

Domain/signature hits from InterPro and related databases.

31 records
Show feature table
Start End DB Term Name
168 187 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
9 283 PANTHER PTHR32243 MALTOSE TRANSPORT SYSTEM PERMEASE-RELATED
13 35 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
269 283 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
113 138 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
76 261 CDD cd06261 TM_PBP2
76 261 InterPro IPR000515 ABC transporter type 1, transmembrane domain MetI-like
82 101 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
188 210 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
35 81 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
12 34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
6 270 Gene3D G3DSA:1.10.3720.10 -
6 270 InterPro IPR035906 MetI-like superfamily
102 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component
102 276 InterPro IPR000515 ABC transporter type 1, transmembrane domain MetI-like
246 268 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
9 283 SUPERFAMILY SSF161098 MetI-like
9 283 InterPro IPR035906 MetI-like superfamily
188 209 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
113 135 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
145 167 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
82 101 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
6 270 FunFam G3DSA:1.10.3720.10:FF:000034 Sugar ABC transporter permease
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
144 167 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
76 268 ProSiteProfiles PS50928 ABC transporter integral membrane type-1 domain profile.
76 268 InterPro IPR000515 ABC transporter type 1, transmembrane domain MetI-like
102 112 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
139 143 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
210 246 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
247 268 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJ82
AlphaFold — — full sequence — Viewing
ColabFold KP13_03645
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
9 0.648
10 0.563
4 0.472
3 0.436

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.71 0.03
2 1.61 0.026
3 1.56 0.024
4 1.1 0.007
5 1.05 0.006