Protein profile

KP13_02055

Queuine tRNA-ribosyltransferase

Genome: KpKP13

Gene: AHE46058.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GJ23
Amino acids 388
Annotations 8
Features 14
PDB binders 61
Druggability 0.64

Overview

Basic information about this protein and its source genome.

Accession
KP13_02055
Gene
AHE46058.1
Status
annotated
Amino acids
388
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
48.889
Human E-value
6.42e-40
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
81.746
DEG E-value
0.0
Localization
Cytoplasmic
ColabFold pLDDT
94.15

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.64
Structure A0A0H3GJ23
Pocket Pocket 1
P2Rank 0.908
Structure A0A0H3GJ23
Pocket Pocket 1
ColabFold model
FPocket 0.677 · Pocket 1
P2Rank 0.888 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 1488 / 4744 genomes with a hit
Normalized 0.314

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0016763 Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
  • GO:0008479 Catalysis of the reaction: guanosine34 in tRNA + queuine = guanine + queuosine34 in tRNA.
  • GO:0101030 OBSOLETE. The modification of a tRNA anticodon loop by replacing guanine with queuonine. Reaction is tRNA guanine + queuine = tRNA queuine + guanine.
  • GO:0006400 The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0046872 Binding to a metal ion.
  • GO:0008616 The chemical reactions and pathways resulting in the formation of queuosines, a series of nucleosides found in position 34 of tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents. The wobble nucleoside of the tRNA sequence (position 34) corresponds to the first position of the anticodon.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
24 377 Pfam PF01702 Queuine tRNA-ribosyltransferase
24 377 InterPro IPR002616 tRNA-guanine(15) transglycosylase-like
16 381 NCBIfam TIGR00449 tRNA-guanine transglycosylase
16 381 InterPro IPR002616 tRNA-guanine(15) transglycosylase-like
3 381 Gene3D G3DSA:3.20.20.105 -
3 381 InterPro IPR036511 Queuine tRNA-ribosyltransferase-like
14 382 FunFam G3DSA:3.20.20.105:FF:000001 Queuine tRNA-ribosyltransferase
14 383 PANTHER PTHR46499 QUEUINE TRNA-RIBOSYLTRANSFERASE
14 377 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt].
14 377 InterPro IPR004803 tRNA-guanine transglycosylase
16 381 NCBIfam TIGR00430 tRNA guanosine(34) transglycosylase Tgt
16 381 InterPro IPR004803 tRNA-guanine transglycosylase
14 377 SUPERFAMILY SSF51713 tRNA-guanine transglycosylase
14 377 InterPro IPR036511 Queuine tRNA-ribosyltransferase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJ23
AlphaFold full sequence Viewing
ColabFold KP13_02055
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.64

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 21.51 0.871
2 4.96 0.224

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

116 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
1UD P28720 404.4 Da LogP 0.10 TPSA 160.4 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CC[C@@H]4[C@H]([C@H]([C@@…
1WJ P28720 404.4 Da LogP 0.10 TPSA 160.4 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CC[C@@H]4[C@H]([C@H]([C@@…
1WK P28720 390.4 Da LogP -0.55 TPSA 171.4 1 viol. ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CC[C@@H]4[C@H]([C@H]([C@@…
2MQ P28720 273.3 Da LogP -0.08 TPSA 138.5 ✓ Ro5 ✓ Clean CNc1[nH]c2c(n1)cc3c(c2CCN)N=C(NC3=O)N
2WU P28720 230.2 Da LogP 0.42 TPSA 112.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(cc2n1)C(=O)NC(=N3)N
2YL P28720 188.2 Da LogP 0.41 TPSA 84.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=NC(=O)NC(=N2)N
2YM P28720 327.4 Da LogP 1.28 TPSA 115.7 ✓ Ro5 ✓ Clean c1c2c(cc3c1nc([nH]3)NCCN4CCCCC4)NC(=NC2=O)N
2YO P28720 312.4 Da LogP 1.70 TPSA 89.7 ✓ Ro5 ✓ Clean c1c2c(cc3c1nc([nH]3)NCCN4CCCCC4)NC=NC2=O
2YV P28720 320.4 Da LogP 2.04 TPSA 112.5 ✓ Ro5 ✓ Clean c1ccc(cc1)CCNc2[nH]c3cc4c(cc3n2)N=C(NC4=O)N
2YW P28720 378.4 Da LogP 1.82 TPSA 138.8 ✓ Ro5 ✓ Clean COC(=O)c1ccc(cc1)CCNc2[nH]c3cc4c(cc3n2)N=C(NC4=…
2YX P28720 345.4 Da LogP 1.91 TPSA 136.3 ✓ Ro5 ✓ Clean c1cc(ccc1CCNc2[nH]c3cc4c(cc3n2)N=C(NC4=O)N)C#N
2YY P28720 364.4 Da LogP 1.73 TPSA 149.8 ✓ Ro5 ✓ Clean c1cc(ccc1CCNc2[nH]c3cc4c(cc3n2)N=C(NC4=O)N)C(=O…
46L P28720 166.2 Da LogP 0.85 TPSA 53.4 ✓ Ro5 ✓ Clean CN(C)c1ccc(cn1)C(=O)O
5NT P28720 265.3 Da LogP -1.41 TPSA 140.1 1 viol. ✓ Clean c1c(c2c([nH]1)C(=O)NC(=N2)N)[C@H]3[C@@H](C[C@H]…
6H8 P28720 204.2 Da LogP 0.91 TPSA 102.6 ✓ Ro5 ✓ Clean [H]/N=C(/N)\Nc1ccc2c(c1)[nH]c(n2)NC
6H9 P28720 205.2 Da LogP 0.21 TPSA 95.8 ✓ Ro5 ✓ Clean CNc1[nH]c2ccc(cc2n1)C(=O)NN
6HD P28720 190.2 Da LogP 0.70 TPSA 83.8 ✓ Ro5 ✓ Clean CNc1[nH]c2ccc(cc2n1)C(=O)N
6JX P28720 314.3 Da LogP 1.58 TPSA 124.8 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(cc2n1)C(=O)NC(=N3)NC(=O)OCC=C
6MM P28720 458.5 Da LogP 1.19 TPSA 158.6 ✓ Ro5 ✓ Clean CC1(OC[C@]2(O1)[C@H]3[C@@H]([C@H](O2)CNc4[nH]c5…
6MQ P28720 402.4 Da LogP 0.68 TPSA 149.4 ✓ Ro5 ✓ Clean CC1(O[C@@H]2[C@H](O[C@H]([C@@H]2O1)OC)CNc3[nH]c…
6N1 P28720 304.4 Da LogP -0.09 TPSA 108.3 ✓ Ro5 ✓ Clean c1cc2c(cc1C(=O)NN)[nH]c(n2)NCCN3CCOCC3
6N2 P28720 303.4 Da LogP 0.61 TPSA 115.1 ✓ Ro5 ✓ Clean [H]/N=C(/N)\Nc1ccc2c(c1)nc([nH]2)NCCN3CCOCC3
6NK P28720 289.3 Da LogP 0.41 TPSA 96.3 ✓ Ro5 ✓ Clean c1cc2c(cc1C(=O)N)[nH]c(n2)NCCN3CCOCC3
6OK P28720 364.4 Da LogP 1.57 TPSA 132.7 ✓ Ro5 ✓ Clean c1cc(ccc1CCNc2[nH]c3cc4c(cc3n2)N=C(NC4=O)N)CCO
725 P28720 418.5 Da LogP 0.76 TPSA 149.4 ✓ Ro5 ✓ Clean CNc1[nH]c2c(n1)cc3c(c2CC[C@@H]4[C@H]([C@H]([C@@…
726 P28720 462.5 Da LogP 0.77 TPSA 158.6 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CC[C@@H]4[C@H]([C@@H]([C@…
72C P28720 430.5 Da LogP 1.25 TPSA 149.4 ✓ Ro5 ✓ Clean CC1(O[C@@H]2[C@H](O[C@H]([C@@H]2O1)OC)CCc3c4c(c…
810 P28720 302.3 Da LogP 1.41 TPSA 124.8 ✓ Ro5 ✓ Clean CCOC(=O)NC1=Nc2cc3c(cc2C(=O)N1)[nH]c(n3)NC
9DG P28720 150.1 Da LogP -0.17 TPSA 87.6 ✓ Ro5 ✓ Clean c1c[nH]c2c1N=C(NC2=O)N
AAQ P28720 363.4 Da LogP 1.76 TPSA 124.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CCNCc4ccccc4)N=C(NC3=O)N
AFQ P28720 355.4 Da LogP 1.75 TPSA 124.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CCNCC4CCCC4)N=C(NC3=O)N
AMH P28720 157.2 Da LogP 0.84 TPSA 63.3 ✓ Ro5 ✓ Clean C1CC(CCC1CN)C(=O)O
AZA P28720 153.1 Da LogP -1.67 TPSA 107.3 ✓ Ro5 ✓ Clean c12c([nH]nn1)NC(=O)NC2=O
BDI P28720 208.2 Da LogP 0.28 TPSA 94.4 ✓ Ro5 ✓ Clean CCCCc1[nH]c2c(n1)C(=O)NNC2=O
BPQ P28720 279.3 Da LogP 0.86 TPSA 125.9 ✓ Ro5 ✓ Clean CC(C)(C)OC(=O)NCc1c[nH]c2c1C(=O)NC(=N2)N
CKR P28720 329.4 Da LogP 0.13 TPSA 125.0 ✓ Ro5 ✓ Clean c1c2c(cc3c1nc([nH]3)NCCN4CCOCC4)N=C(NC2=O)N
DQU P28720 176.2 Da LogP 0.50 TPSA 98.0 ✓ Ro5 ✓ Clean c1cc2c(cc1N)c(nc(n2)N)O
DTT P28720 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
E48 P28720 458.5 Da LogP 1.19 TPSA 158.6 ✓ Ro5 ✓ Clean CC1(O[C@@H]2CO[C@@]3([C@H]([C@@H]2O1)OC(O3)(C)C…
E4E P28720 362.3 Da LogP -1.11 TPSA 171.4 1 viol. ✓ Clean CO[C@H]1[C@@H]([C@@H]([C@H](O1)CNc2[nH]c3cc4c(c…
E89 P28720 335.4 Da LogP 2.18 TPSA 109.7 ✓ Ro5 ✓ Clean COc1ccc(cc1)CCc2c3c(cc4c2N=C(NC4=O)N)[nH]cn3
F63 P28720 204.2 Da LogP 2.19 TPSA 47.3 ✓ Ro5 ✓ Clean CNCc1ccc(o1)Oc2cccnc2
GGB P28720 176.2 Da LogP -1.80 TPSA 134.5 ✓ Ro5 ✓ Clean [H]/N=C(\N)/NOCC[C@@H](C(=O)O)N
GUN P28720 151.1 Da LogP -0.77 TPSA 100.5 ✓ Ro5 ✓ Clean c1[nH]c2c(n1)C(=O)NC(=N2)N
ITE P28720 215.2 Da LogP 0.84 TPSA 86.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(cc2n1)N=CNC3=O
K75 P28720 254.3 Da LogP 1.22 TPSA 91.1 ✓ Ro5 ✓ Clean CC#CC1c2cc3c(cc2N=C(N1)N)[nH]c(n3)NC
K7H P28720 216.2 Da LogP 0.65 TPSA 91.1 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(cc2n1)CNC(=N3)N
MLI B8ZXI1 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
NE8 P28720 305.3 Da LogP 2.17 TPSA 100.5 ✓ Ro5 ✓ Clean c1ccc(cc1)CCc2c3c(cc4c2N=C(NC4=O)N)[nH]cn3
NEZ P28720 319.4 Da LogP 2.48 TPSA 100.5 ✓ Ro5 ✓ Clean Cc1ccc(cc1)CCc2c3c(cc4c2N=C(NC4=O)N)[nH]cn3
OQH P28720 205.3 Da LogP 1.79 TPSA 46.2 ✓ Ro5 ✓ Clean CCNC(=O)CCC(=O)c1ccccc1
OQN P28720 334.4 Da LogP 2.21 TPSA 112.5 ✓ Ro5 ✓ Clean CNc1[nH]c2c(n1)cc3c(c2CCc4ccccc4)N=C(NC3=O)N
OQQ P28720 402.4 Da LogP 3.23 TPSA 112.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CCc4ccc(cc4)C(F)(F)F)NC(=…
PK2 P28720 369.5 Da LogP 2.14 TPSA 124.5 ✓ Ro5 ✓ Clean CNc1[nH]c2cc3c(c(c2n1)CCNCC4CCCCC4)N=C(NC3=O)N
PQ0 P28720 175.2 Da LogP -0.29 TPSA 111.3 ✓ Ro5 ✓ Clean c1c(c2c([nH]1)N=C(NC2=O)N)C#N
PRF P28720 179.2 Da LogP -0.71 TPSA 113.6 ✓ Ro5 ✓ Clean c1c(c2c([nH]1)N=C(NC2=O)N)CN
QEI P28720 277.3 Da LogP -1.42 TPSA 140.1 1 viol. ✓ Clean c1c(c2c([nH]1)N=C(NC2=O)N)CN[C@H]3C=C[C@@H]([C@…
S60 P28720 215.2 Da LogP 0.69 TPSA 100.5 ✓ Ro5 ✓ Clean Cc1[nH]c2cc3c(cc2n1)N=C(NC3=O)N
S98 P28720 312.4 Da LogP 2.06 TPSA 112.5 ✓ Ro5 ✓ Clean c1cc(sc1)CNc2[nH]c3cc4c(cc3n2)N=C(NC4=O)N
SAQ P28720 297.3 Da LogP 2.47 TPSA 86.5 ✓ Ro5 ✓ Clean c1cc(sc1)CNc2[nH]c3cc4c(cc3n2)N=CNC4=O
SQO P28720 314.3 Da LogP 0.54 TPSA 98.9 ✓ Ro5 ✓ Clean c1c2c(cc3c1[nH]c(n3)NCCN4CCOCC4)N=CNC2=O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.