Protein profile

KP13_02063

Carbohydrate/purine kinase domain-containing protein

Genome: KpKP13

Gene: AHE46066.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GNE9
Amino acids 322
Annotations 1
Features 10
PDB binders 22
Druggability 0.655

Overview

Basic information about this protein and its source genome.

Accession
KP13_02063
Gene
AHE46066.1
Status
annotated
Amino acids
322
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
27.358
Human E-value
1.22e-08
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
95.26

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.655
Structure A0A0H3GNE9
Pocket Pocket 2
P2Rank 0.967
Structure A0A0H3GNE9
Pocket Pocket 1
ColabFold model
FPocket 0.401 · Pocket 5
P2Rank 0.968 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 12 / 4744 genomes with a hit
Normalized 0.003

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016301 Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
1 11 SignalP_EUK SignalP-noTM SignalP-noTM
3 319 Gene3D G3DSA:3.40.1190.20 -
3 319 InterPro IPR029056 Ribokinase-like
4 238 PANTHER PTHR42774 PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN
3 305 SUPERFAMILY SSF53613 Ribokinase-like
3 305 InterPro IPR029056 Ribokinase-like
22 301 Pfam PF00294 pfkB family carbohydrate kinase
22 301 InterPro IPR011611 Carbohydrate kinase PfkB
253 266 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2.
253 266 InterPro IPR002173 Carbohydrate/purine kinase, PfkB, conserved site

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GNE9
AlphaFold full sequence Viewing
ColabFold KP13_02063
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.655

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 29.05 0.929

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

172 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
A12 Q9H477 425.2 Da LogP -1.64 TPSA 223.4 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
A1Y P50053 217.3 Da LogP 1.41 TPSA 49.2 ✓ Ro5 ✓ Clean Cc1cc(nc(c1C#N)N2CCOCC2)C
A2J P50053 214.1 Da LogP 1.94 TPSA 45.8 ✓ Ro5 ✓ Clean c1ccc2c(c1)NC(=O)C(=N2)C(F)(F)F
A3J P50053 338.3 Da LogP 2.98 TPSA 75.9 ✓ Ro5 ✓ Clean CCc1cc2c([nH]1)c(c(c(n2)C(F)(F)F)C#N)N3CCC(C3)(…
A3Y P50053 413.4 Da LogP 1.30 TPSA 86.9 ✓ Ro5 ✓ Clean c1c(c(c(nc1N2CCN(CC2)CCO)N3CCCC(C3)CO)C#N)C(F)(…
A4G P50053 246.3 Da LogP 1.48 TPSA 65.0 ✓ Ro5 ✓ Clean Cc1c[nH]c2c1c(ncn2)N3CCC[C@H](C3)CO
A4J P50053 372.3 Da LogP 0.47 TPSA 103.9 ✓ Ro5 ✓ Clean CC1(CCN(C1)c2c(c(cc(n2)N3CC(C(C3)O)O)C(F)(F)F)C…
ACP Q9H477 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
AN2 Q9H477 426.2 Da LogP -1.78 TPSA 238.4 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP O59128 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
LJ9 P50053 332.5 Da LogP 3.24 TPSA 33.1 ✓ Ro5 ✓ Clean CCc1c2ccc(cc2n(n1)c3ccccc3)N4C[C@H]5CNC[C@H]5C4
QUZ P50053 130.1 Da LogP 1.63 TPSA 25.8 ✓ Ro5 ✓ Clean c1ccc2c(c1)cncn2
RAH P32143 324.2 Da LogP -3.21 TPSA 191.0 1 viol. ✓ Clean C([C@@H]1[C@H]([C@@H]([C@](O1)(COP(=O)(O)O)O)O)…
RZA P50053 358.3 Da LogP 0.08 TPSA 103.9 ✓ Ro5 ✓ Clean CC1C(CN1c2c(c(cc(n2)N3CC(C(C3)O)O)C(F)(F)F)C#N)O
S6D P50053 356.3 Da LogP 2.25 TPSA 69.6 ✓ Ro5 ✓ Clean C[C@H]1CCN1c2nc(cc(n2)N3C[C@@H]4[C@H](C3)C4CC(=…
S6J P50053 368.4 Da LogP 1.22 TPSA 83.6 ✓ Ro5 ✓ Clean CC1C(CN1c2c(c(cc(n2)N3CC4C(C3)C4CO)C(F)(F)F)C#N…
S6S P50053 396.4 Da LogP 1.70 TPSA 100.7 ✓ Ro5 ✓ Clean CC1C(CN1c2c(c(cc(n2)N3CC4C(C3)C4CC(=O)O)C(F)(F)…
TR2 P50053 151.2 Da LogP 2.00 TPSA 33.1 ✓ Ro5 ✓ Clean c1cnc2ccsc2c1O
TR3 P50053 366.5 Da LogP 3.69 TPSA 59.0 ✓ Ro5 ✓ Clean CSc1c2ccc(cc2n(n1)c3ccccc3)NC(=O)C4CCNCC4
TR4 P50053 230.3 Da LogP 2.05 TPSA 67.6 ✓ Ro5 ✓ Clean CSc1c(c(n(n1)c2ccccc2)N)C#N
XNB P50053 422.6 Da LogP 3.12 TPSA 90.9 ✓ Ro5 ✓ Clean CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5
XNN P50053 434.6 Da LogP 3.12 TPSA 90.9 ✓ Ro5 ✓ Clean CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CC6(C5)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.