Protein profile

KP13_01799

(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase

Genome: KpKP13

Gene: AHE46239.1 fabZ Structure source: AlphaFold + ColabFold UniProt A0A0H3GIK1
Amino acids 151
Annotations 7
Features 13
PDB binders 21
Druggability 0.273

Overview

Basic information about this protein and its source genome.

Accession
KP13_01799
Gene
AHE46239.1 fabZ
Status
annotated
Amino acids
151
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
98.013
DEG E-value
1.08e-107
Localization
Cytoplasmic
ColabFold pLDDT
95.18

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.273
Structure A0A0H3GIK1
Pocket Pocket 6
P2Rank 0.493
Structure A0A0H3GIK1
Pocket Pocket 1
ColabFold model
FPocket 0.356 · Pocket 9
P2Rank 0.38 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 446 / 4744 genomes with a hit
Normalized 0.094

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 6 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

6
  • GO:0016836 Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
  • GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0019171 Catalysis of the reaction: a (3R)-hydroxyacyl-[acyl-carrier-protein] = a (2E)-enoyl-[acyl-carrier-protein] + H2O.
  • GO:0009245 The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.

Sequence Features

Domain/signature hits from InterPro and related databases.

13 records
Show feature table
Start End DB Term Name
8 146 NCBIfam TIGR01750 3-hydroxyacyl-ACP dehydratase FabZ
8 146 InterPro IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
4 148 PANTHER PTHR30272 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE
4 148 InterPro IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
7 146 SUPERFAMILY SSF54637 Thioesterase/thiol ester dehydrase-isomerase
7 146 InterPro IPR029069 HotDog domain superfamily
8 149 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ].
8 149 InterPro IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
17 146 CDD cd01288 FabZ
17 141 Pfam PF07977 FabA-like domain
17 141 InterPro IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
1 151 Gene3D G3DSA:3.10.129.10 Hotdog Thioesterase
1 151 FunFam G3DSA:3.10.129.10:FF:000001 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GIK1
AlphaFold full sequence Viewing
ColabFold KP13_01799
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.273

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 7.56 0.398
2 1.18 0.01

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

76 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2BC Q5G940 464.1 Da LogP 4.54 TPSA 81.9 ✓ Ro5 Alert c1ccc2cc(ccc2c1)C(=O)N/N=C/c3cc(c(c(c3O)Br)O)Br
2BE Q5G940 448.5 Da LogP 4.04 TPSA 81.9 ✓ Ro5 Alert c1cc(ccc1C(=O)N/N=C/c2cc(c(c(c2O)Br)O)Br)Cl
2RB Q5G940 444.1 Da LogP 3.40 TPSA 91.2 ✓ Ro5 Alert COc1ccc(cc1)C(=O)N/N=C/c2cc(c(c(c2O)Br)O)Br
3BE Q5G940 492.9 Da LogP 4.15 TPSA 81.9 ✓ Ro5 Alert c1cc(cc(c1)Br)C(=O)N/N=C/c2cc(c(c(c2O)Br)O)Br
4BB Q5G940 470.2 Da LogP 4.68 TPSA 81.9 ✓ Ro5 Alert CC(C)(C)c1ccc(cc1)C(=O)N/N=C/c2cc(c(c(c2O)Br)O)…
4BE Q5G940 492.9 Da LogP 4.15 TPSA 81.9 ✓ Ro5 Alert c1cc(ccc1C(=O)N/N=C/c2cc(c(c(c2O)Br)O)Br)Br
AGI Q5G940 270.2 Da LogP 2.58 TPSA 90.9 ✓ Ro5 ✓ Clean c1cc(ccc1C2=CC(=O)c3c(cc(cc3O2)O)O)O
BDE O25928 415.0 Da LogP 2.78 TPSA 94.8 ✓ Ro5 Alert c1cc(cnc1)C(=O)N/N=C/c2cc(c(c(c2O)Br)O)Br
BEN Q5G940 120.2 Da LogP 0.97 TPSA 49.9 ✓ Ro5 ✓ Clean [H]/N=C(\c1ccccc1)/N
CAC Q965D7 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
EMO Q5G940 270.2 Da LogP 1.89 TPSA 94.8 ✓ Ro5 Alert Cc1cc2c(c(c1)O)C(=O)c3c(cc(cc3O)O)C2=O
JUG Q5G940 174.2 Da LogP 1.33 TPSA 54.4 ✓ Ro5 Alert c1cc2c(c(c1)O)C(=O)C=CC2=O
K91 Q965D7 306.1 Da LogP 5.04 TPSA 42.4 1 viol. ✓ Clean c1cc2c(ccc(c2nc1)Oc3cc(ccc3O)Cl)Cl
KM0 Q965D7 269.7 Da LogP 4.47 TPSA 22.1 ✓ Ro5 ✓ Clean c1ccc(cc1)COc2ccc(c3c2nccc3)Cl
KM1 Q965D7 304.2 Da LogP 5.12 TPSA 22.1 1 viol. ✓ Clean c1cc(cc(c1)Cl)COc2ccc(c3c2nccc3)Cl
PN7 Q5G940 358.4 Da LogP -0.96 TPSA 145.2 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCS)O
PNS Q5G940 358.4 Da LogP -0.96 TPSA 145.2 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS)O
QUE Q5G940 302.2 Da LogP 1.99 TPSA 131.4 ✓ Ro5 Alert c1cc(c(cc1C2=C(C(=O)c3c(cc(cc3O2)O)O)O)O)O
SAK Q5G940 286.3 Da LogP 2.81 TPSA 76.0 ✓ Ro5 ✓ Clean COc1cc(c2c(c1)O[C@@H](CC2=O)c3ccc(cc3)O)O
SCB O25928 482.9 Da LogP 5.55 TPSA 92.3 1 viol. Alert COCCN1C(=O)C(=Cc2ccc(o2)c3ccc(c(c3)C(=O)O)Cl)SC…
XLN P0A6Q6 456.5 Da LogP 0.34 TPSA 162.3 ✓ Ro5 ✓ Clean CCC/C=C\S(=O)(=O)CCCNC(=O)CCNC(=O)[C@@H](C(C)(C…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.