KpKP13 Protein target profile

Cell division protein ftsZ

Accession: KP13_01900

Gene: AHE46341.1 ftsZ 3D evidence: Experimental + ColabFold model UniProt A0A0H3GRR0|W9BCK7
Length 383
Pocket druggability (P2Rank · Experimental) 0.926
Direct ligand evidence 0 83 total records
Functional annotation 0 EC 2 GO
Target summary

Strong target candidate with converging metabolic, structural and chemical evidence.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
No hit
Gut microbiome similarity
45.8% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
Y
DEG identity (%)
98.695 Higher values support similarity to known essential genes.
DEG E-value
0.0 Smaller values mean stronger essential-gene similarity.

Structure confidence

ColabFold pLDDT
82.35 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

PDB experimental structure

P2Rank's binding-site probability is the primary druggability signal shown across the app; FPocket's druggability score is shown alongside it for comparison. Both estimate small-molecule pocket quality after applying the curated structure priority — neither is experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

Druggability (P2Rank) 0.926
Structure 8H1O
Pocket Pocket 1
Druggability (FPocket) 0.883
Structure 8GZW
Pocket Pocket 2
ColabFold model
P2Rank 0.907 · Pocket 1
FPocket 0.264 · Pocket 9
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 2171 / 4744 genomes with a hit
Prevalence 45.8%

Sequence

Primary amino-acid sequence viewer.

MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALDGADMVFIAAGMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMSPLTQEQKPAAKVVNDNTPQTAKEPDYLDIPAFLRKQAD

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Subcellular localization

Localization
Cytoplasmic

Gene Ontology (GO)

2
  • GO:0003924 Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate.
  • GO:0005525 Binding to GTP, guanosine triphosphate.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

40 records
Show feature table
Start End DB Term Name
12 204 SMART SM00864 Tubulin_4
12 204 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
10 316 FunFam G3DSA:3.40.50.1440:FF:000023 Cell division protein FtsZ
13 172 Pfam PF00091 Tubulin/FtsZ family, GTPase domain
13 172 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
12 207 SUPERFAMILY SSF52490 Tubulin nucleotide-binding domain-like
12 207 InterPro IPR036525 Tubulin/FtsZ, GTPase domain superfamily
188 210 PRINTS PR00423 Cell division protein FtsZ signature
188 210 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
97 117 PRINTS PR00423 Cell division protein FtsZ signature
97 117 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
211 232 PRINTS PR00423 Cell division protein FtsZ signature
211 232 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
125 146 PRINTS PR00423 Cell division protein FtsZ signature
125 146 InterPro IPR003008 Tubulin/FtsZ, GTPase domain
96 117 ProSitePatterns PS01135 FtsZ protein signature 2.
96 117 InterPro IPR020805 Cell division protein FtsZ, conserved site
5 219 Gene3D G3DSA:3.40.50.1440 Tubulin/FtsZ, GTPase domain
5 219 InterPro IPR036525 Tubulin/FtsZ, GTPase domain superfamily
7 338 NCBIfam TIGR00065 cell division protein FtsZ
7 338 InterPro IPR000158 Cell division protein FtsZ
203 319 SUPERFAMILY SSF55307 Tubulin C-terminal domain-like
203 319 InterPro IPR008280 Tubulin/FtsZ, C-terminal
224 341 Gene3D G3DSA:3.30.1330.20 -
224 341 InterPro IPR037103 Tubulin/FtsZ-like, C-terminal domain
221 315 Pfam PF12327 FtsZ family, C-terminal domain
221 315 InterPro IPR024757 Cell division protein FtsZ, C-terminal
24 314 CDD cd02201 FtsZ_type1
24 314 InterPro IPR000158 Cell division protein FtsZ
43 77 ProSitePatterns PS01134 FtsZ protein signature 1.
43 77 InterPro IPR020805 Cell division protein FtsZ, conserved site
349 371 MobiDBLite mobidb-lite consensus disorder prediction
349 366 MobiDBLite mobidb-lite consensus disorder prediction
224 341 FunFam G3DSA:3.30.1330.20:FF:000004 Cell division protein FtsZ
8 320 PANTHER PTHR30314 CELL DIVISION PROTEIN FTSZ-RELATED
8 320 InterPro IPR045061 Tubulin-like protein FtsZ/CetZ
8 343 Hamap MF_00909 Cell division protein FtsZ [ftsZ].
8 343 InterPro IPR000158 Cell division protein FtsZ
206 324 SMART SM00865 Tubulin_C_4
206 324 InterPro IPR018316 Tubulin/FtsZ, 2-layer sandwich domain

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

Download VMD script Full viewer

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability (FPocket): high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Pocket 1 FPocket #2
0.883 Unusual size
Show in viewer
Surrounding area
All structural evidence 6 experimental · 1 predicted

Structural evidence

6 + 1

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 6LL5
X-ray A Loaded
PDB 8GZV
X-ray A Loaded
PDB 8GZW
X-ray A Viewing
PDB 8H1O
X-ray A Loaded
PDB 8IBN
X-ray A Loaded
PDB 9ISK
X-ray A Loaded
ColabFold KP13_01900
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

83 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 33 records from similar proteins
Structural ligands 6 0 loaded crystals
Measured bioactivity 27 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
DVX PDB via homolog 781.3 Da · LogP 7.61 · TPSA 112.6 Open detail RCSB PDB
GSP PDB via homolog Detail RCSB PDB
MB3 PDB via homolog Detail RCSB PDB
ZI1 PDB via homolog Detail RCSB PDB
ZI6 PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
DVX RCSB PDB Q6GHP9 781.3 Da LogP 7.61 TPSA 112.6 2 viol. ✓ Clean [B-]1(n2c(ccc2CCC(=O)OC[C@H](c3nc(c(o3)Br)c4ccc…
GSP RCSB PDB P17865 539.2 Da LogP -2.22 TPSA 282.0 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O…
MB3 RCSB PDB P0A031 99.1 Da LogP 0.24 TPSA 20.3 ✓ Ro5 ✓ Clean CN1CCCC1=O
ZI1 RCSB PDB Q6GHP9 491.2 Da LogP 5.64 TPSA 78.4 1 viol. ✓ Clean C[C@H](c1nc(c(o1)Br)c2ccc(cc2)C(F)(F)F)Oc3ccc(c…
ZI6 RCSB PDB Q6GHP9 477.2 Da LogP 5.08 TPSA 78.4 1 viol. ✓ Clean c1cc(ccc1c2c(oc(n2)COc3ccc(c(c3F)C(=O)N)F)Br)C(…
ZI7 RCSB PDB Q6GHP9 389.3 Da LogP 3.67 TPSA 78.1 ✓ Ro5 ✓ Clean c1cc(c(c(c1OCc2nc3cc(cnc3s2)C(F)(F)F)F)C(=O)N)F

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.