Protein profile

KP13_02494

5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

Genome: KpKP13

Gene: hpcC AHE46504.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GM33
Amino acids 488
Annotations 4
Features 18
PDB binders 15
Druggability 0.699

Overview

Basic information about this protein and its source genome.

Accession
KP13_02494
Gene
hpcC AHE46504.1
Status
annotated
Amino acids
488
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
42.348
Human E-value
4.01e-138
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
40.86
DEG E-value
4.95e-106
Localization
Cytoplasmic
ColabFold pLDDT
97.32

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.699
Structure A0A0H3GM33
Pocket Pocket 2
P2Rank 0.969
Structure A0A0H3GM33
Pocket Pocket 1
ColabFold model
FPocket 0.93 · Pocket 1
P2Rank 0.935 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 57 / 4744 genomes with a hit
Normalized 0.012

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:1901023 The chemical reactions and pathways resulting in the breakdown of 4-hydroxyphenylacetate.
  • GO:0018480 Catalysis of the reaction: 5-carboxymethyl-2-hydroxymuconate semialdehyde + H2O + NAD+ = 5-carboxymethyl-2-hydroxymuconate + NADH + H+.

Sequence Features

Domain/signature hits from InterPro and related databases.

18 records
Show feature table
Start End DB Term Name
247 447 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
247 447 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
4 487 NCBIfam TIGR02299 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
4 487 InterPro IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
21 476 CDD cd07093 ALDH_F8_HMSADH
1 481 PANTHER PTHR43720 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
243 250 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
243 250 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site
247 443 FunFam G3DSA:3.40.309.10:FF:000012 Betaine aldehyde dehydrogenase
14 272 FunFam G3DSA:3.40.605.10:FF:000001 Aldehyde dehydrogenase 1
17 474 Pfam PF00171 Aldehyde dehydrogenase family
17 474 InterPro IPR015590 Aldehyde dehydrogenase domain
3 480 SUPERFAMILY SSF53720 ALDH-like
3 480 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
271 282 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
271 282 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
15 472 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
15 472 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GM33
AlphaFold full sequence Viewing
ColabFold KP13_02494
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.699
12 0.652

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 34.46 0.95
2 0.83 0.003
3 0.71 0.001

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

165 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2NO P05091 46.0 Da LogP 0.10 TPSA 49.3 ✓ Ro5 ✓ Clean N(=O)[O]
2VS Q83V33 142.1 Da LogP 0.27 TPSA 74.6 ✓ Ro5 ✓ Clean C(=C/C=O)\C=C(\C(=O)O)/O
3AK P05091 237.3 Da LogP 2.42 TPSA 37.4 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2c3ccccc3C(=O)C2=O
6OA Q83V33 144.1 Da LogP 0.06 TPSA 77.8 ✓ Ro5 ✓ Clean C(/C=C/C=C(/C(=O)O)\O)O
6OD Q83V33 141.1 Da LogP -0.33 TPSA 80.4 ✓ Ro5 ✓ Clean C(=C/C=O)\C=C(/C(=O)O)\N
6OH Q83V33 142.1 Da LogP 0.27 TPSA 74.6 ✓ Ro5 ✓ Clean C(=C/C=O)\C=C(/C(=O)O)\O
6UN Q83V33 142.1 Da LogP 0.27 TPSA 74.6 ✓ Ro5 ✓ Clean C(=C/C(=O)C(=O)O)\C=C\O
BTB P05091 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO
BXB P05091 324.2 Da LogP 3.65 TPSA 47.6 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)C(=O)NCc2ccc3c(c2)OCO3)Cl
CRD P05091 70.1 Da LogP 0.76 TPSA 17.1 ✓ Ro5 ✓ Clean C\C=C\C=O
I3E P05091 162.2 Da LogP 2.84 TPSA 17.1 ✓ Ro5 ✓ Clean CCc1ccc(cc1)C(=O)CC
N98 P47895 373.4 Da LogP 3.58 TPSA 75.0 ✓ Ro5 ✓ Clean COC(=O)c1cc(nc2n1nc(c2)c3ccccc3)c4ccc5c(c4)OCO5
NW8 P47895 304.8 Da LogP 5.32 TPSA 17.3 1 viol. ✓ Clean c1ccc(cc1)c2cn3cccc(c3n2)c4ccc(cc4)Cl
REA P47895 300.4 Da LogP 5.60 TPSA 37.3 1 viol. ✓ Clean CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)…
TNG P05091 227.1 Da LogP -1.02 TPSA 157.1 ✓ Ro5 ✓ Clean C(C(CO[N+](=O)[O-])O[N+](=O)[O-])O[N+](=O)[O-]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.