Protein profile

KP13_01747

Succinate-semialdehyde dehydrogenase [NADP+]

Genome: KpKP13

Gene: AHE46519.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GM18
Amino acids 456
Annotations 3
Features 18
PDB binders 13
Druggability 0.448

Overview

Basic information about this protein and its source genome.

Accession
KP13_01747
Gene
AHE46519.1
Status
annotated
Amino acids
456
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
41.573
Human E-value
8.47e-14
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
42.163
DEG E-value
5.07e-117
Localization
Cytoplasmic
ColabFold pLDDT
98.22

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.448
Structure A0A0H3GM18
Pocket Pocket 2
P2Rank 0.864
Structure A0A0H3GM18
Pocket Pocket 1
ColabFold model
FPocket 0.446 · Pocket 1
P2Rank 0.829 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 107 / 4744 genomes with a hit
Normalized 0.023

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0004030 Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+.

Sequence Features

Domain/signature hits from InterPro and related databases.

18 records
Show feature table
Start End DB Term Name
25 454 CDD cd07100 ALDH_SSADH1_GabD1
25 454 InterPro IPR044148 Succinate-semialdehyde dehydrogenase GabD1-like
232 423 FunFam G3DSA:3.40.309.10:FF:000009 Aldehyde dehydrogenase A
3 455 SUPERFAMILY SSF53720 ALDH-like
3 455 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
1 454 PANTHER PTHR43217 SUCCINATE SEMIALDEHYDE DEHYDROGENASE [NAD(P)+] SAD
1 454 InterPro IPR047110 Succinate-semialdehyde dehydrogenase [NADP(+)] GABD/Sad-like
256 267 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
256 267 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
3 452 Pfam PF00171 Aldehyde dehydrogenase family
3 452 InterPro IPR015590 Aldehyde dehydrogenase domain
3 450 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
3 450 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
236 425 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
236 425 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
3 239 FunFam G3DSA:3.40.605.10:FF:000012 NAD-dependent succinate-semialdehyde dehydrogenase
228 235 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
228 235 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GM18
AlphaFold full sequence Viewing
ColabFold KP13_01747
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.448
1 0.337
10 0.211

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 12.2 0.642
2 12.08 0.638
3 4.69 0.205

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

163 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0D8 P17202 75.1 Da LogP -0.67 TPSA 46.2 ✓ Ro5 ✓ Clean C(CN)CO
5OZ G7VCG0 72.1 Da LogP 0.84 TPSA 17.1 ✓ Ro5 ✓ Clean CC(C)C=O
6ZU P00352 344.4 Da LogP 3.03 TPSA 73.6 ✓ Ro5 ✓ Clean CC1=C(C(=O)Oc2c1ccc(c2)OS(=O)(=O)C)Cc3ccccc3
AE3 P17202 134.2 Da LogP 0.03 TPSA 38.7 ✓ Ro5 ✓ Clean CCOCCOCCO
CHT P17202 104.2 Da LogP -0.32 TPSA 20.2 ✓ Ro5 ✓ Clean C[N+](C)(C)CCO
CQY O94788 430.5 Da LogP 3.62 TPSA 79.2 ✓ Ro5 ✓ Clean CCOc1ccsc1C(=O)N2CCN(CC2)c3ccc(c(c3)N4CCCC4)[N+…
CU4 O94788 460.5 Da LogP 4.21 TPSA 104.8 ✓ Ro5 ✓ Clean CS(=O)(=O)c1ccc(cc1)c2c(cn(n2)c3ccc(cc3)C#N)C(=…
ETX P17202 90.1 Da LogP 0.02 TPSA 29.5 ✓ Ro5 ✓ Clean CCOCCO
K9P P00352 297.4 Da LogP 4.58 TPSA 40.5 ✓ Ro5 ✓ Clean CCCCCC(=O)N1C[C@H](c2c1cc(c3c2cccc3)O)C
N98 P47895 373.4 Da LogP 3.58 TPSA 75.0 ✓ Ro5 ✓ Clean COC(=O)c1cc(nc2n1nc(c2)c3ccccc3)c4ccc5c(c4)OCO5
NW8 P47895 304.8 Da LogP 5.32 TPSA 17.3 1 viol. ✓ Clean c1ccc(cc1)c2cn3cccc(c3n2)c4ccc(cc4)Cl
REA P47895 300.4 Da LogP 5.60 TPSA 37.3 1 viol. ✓ Clean CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)…
TXE P00352 667.5 Da LogP -2.95 TPSA 317.6 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.