Protein profile

KP13_03720

putative oxidoreductase

Genome: KpKP13

Gene: AHE46561.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GR23
Amino acids 239
Annotations 2
Features 21
PDB binders 6
Druggability 0.97

Overview

Basic information about this protein and its source genome.

Accession
KP13_03720
Gene
AHE46561.1
Status
annotated
Amino acids
239
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
34.524
Human E-value
6.05e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
95.62

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.97
Structure A0A0H3GR23
Pocket Pocket 6
P2Rank 0.973
Structure A0A0H3GR23
Pocket Pocket 1
ColabFold model
FPocket 0.958 · Pocket 8
P2Rank 0.977 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 35 / 4744 genomes with a hit
Normalized 0.007

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.

Sequence Features

Domain/signature hits from InterPro and related databases.

21 records
Show feature table
Start End DB Term Name
126 154 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
126 154 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
1 3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
18 22 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
3 236 PANTHER PTHR44196 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B
23 239 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
3 180 Pfam PF00106 short chain dehydrogenase
3 180 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
2 237 Gene3D G3DSA:3.40.50.720 -
1 22 Phobius SIGNAL_PEPTIDE Signal peptide region
4 17 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
3 20 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
3 20 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
113 129 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
113 129 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
160 177 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
160 177 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
139 158 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
139 158 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
3 236 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
3 236 InterPro IPR036291 NAD(P)-binding domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GR23
AlphaFold full sequence Viewing
ColabFold KP13_03720
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.97

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 37.44 0.958
2 4.52 0.194
3 2.34 0.061

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

96 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
8X3 D3U1D9 126.1 Da LogP -1.13 TPSA 74.6 ✓ Ro5 ✓ Clean C(CS(=O)(=O)O)O
A6O C0IR58 314.4 Da LogP 3.93 TPSA 46.5 ✓ Ro5 ✓ Clean CC[C@]1([C@H](CCC1=O)O)C/C=C/2\CCCc3c2ccc(c3)OC
AAE A0A1E3M3N6 102.1 Da LogP 0.05 TPSA 54.4 ✓ Ro5 ✓ Clean CC(=O)CC(=O)O
PG0 P39333 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO
QT8 A0A1E3M3N6 116.1 Da LogP 0.44 TPSA 54.4 ✓ Ro5 ✓ Clean CCC(=O)CC(=O)O
TAM C0IR58 163.2 Da LogP -1.17 TPSA 86.7 ✓ Ro5 ✓ Clean C(CO)C(CCO)(CCO)N

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.