Protein profile

KP13_01287

Magnesium-transporting ATPase, P-type 1

Genome: KpKP13

Gene: AHE46647.1 mgtA Structure source: AlphaFold + ColabFold UniProt A0A0H3GQU9
Amino acids 902
Annotations 10
Features 83
PDB binders 6
Druggability 0.611

Overview

Basic information about this protein and its source genome.

Accession
KP13_01287
Gene
AHE46647.1 mgtA
Status
annotated
Amino acids
902
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
38.889
Human E-value
1.14e-08
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
85.0

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.611
Structure A0A0H3GQU9
Pocket Pocket 27
P2Rank 0.298
Structure A0A0H3GQU9
Pocket Pocket 1
ColabFold model
FPocket 0.981 · Pocket 49
P2Rank 0.48 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 275 / 4744 genomes with a hit
Normalized 0.058

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 9 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

9
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0015693 The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0015444 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mg2+(out) = ADP + phosphate + Mg2+(in).
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

83 records
Show feature table
Start End DB Term Name
862 872 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
387 548 Gene3D G3DSA:3.40.1110.10 -
387 548 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
295 313 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
370 551 SUPERFAMILY SSF81660 Metal cation-transporting ATPase, ATP-binding domain N
370 551 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
117 121 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
93 116 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
873 895 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
372 680 Gene3D G3DSA:3.40.50.1000 -
372 680 InterPro IPR023214 HAD superfamily
730 751 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
726 892 Pfam PF00689 Cation transporting ATPase, C-terminus
726 892 InterPro IPR006068 Cation-transporting P-type ATPase, C-terminal
371 657 Pfam PF00702 haloacid dehalogenase-like hydrolase
725 729 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
357 695 SFLD SFLDG00002 C1.7: P-type atpase like
159 262 FunFam G3DSA:2.70.150.10:FF:000045 Magnesium-translocating P-type ATPase
873 895 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
896 902 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
536 687 SUPERFAMILY SSF56784 HAD-like
536 687 InterPro IPR036412 HAD-like superfamily
773 795 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
172 274 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
172 274 InterPro IPR008250 P-type ATPase, A domain superfamily
122 141 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
751 764 PRINTS PR01836 Magnesium-transporting ATPase signature
751 764 InterPro IPR006415 P-type ATPase, subfamily IIIB
806 827 PRINTS PR01836 Magnesium-transporting ATPase signature
806 827 InterPro IPR006415 P-type ATPase, subfamily IIIB
856 877 PRINTS PR01836 Magnesium-transporting ATPase signature
856 877 InterPro IPR006415 P-type ATPase, subfamily IIIB
305 324 PRINTS PR01836 Magnesium-transporting ATPase signature
305 324 InterPro IPR006415 P-type ATPase, subfamily IIIB
771 787 PRINTS PR01836 Magnesium-transporting ATPase signature
771 787 InterPro IPR006415 P-type ATPase, subfamily IIIB
288 304 PRINTS PR01836 Magnesium-transporting ATPase signature
288 304 InterPro IPR006415 P-type ATPase, subfamily IIIB
701 716 PRINTS PR01836 Magnesium-transporting ATPase signature
701 716 InterPro IPR006415 P-type ATPase, subfamily IIIB
409 422 PRINTS PR01836 Magnesium-transporting ATPase signature
409 422 InterPro IPR006415 P-type ATPase, subfamily IIIB
719 730 PRINTS PR01836 Magnesium-transporting ATPase signature
719 730 InterPro IPR006415 P-type ATPase, subfamily IIIB
752 771 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
357 695 SFLD SFLDF00027 p-type atpase
357 695 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
142 294 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
48 121 SMART SM00831 Cation_ATPase_N_a_2
48 121 InterPro IPR004014 Cation-transporting P-type ATPase, N-terminal
796 806 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
295 314 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
61 894 PANTHER PTHR42861 CALCIUM-TRANSPORTING ATPASE
1 92 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
324 346 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
122 141 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
51 116 Pfam PF00690 Cation transporter/ATPase, N-terminus
51 116 InterPro IPR004014 Cation-transporting P-type ATPase, N-terminal
49 900 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
49 900 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
837 861 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
347 701 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
163 355 Pfam PF00122 E1-E2 ATPase
314 318 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
702 724 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
124 855 Gene3D G3DSA:1.20.1110.10 -
39 902 NCBIfam TIGR01524 magnesium-translocating P-type ATPase
39 902 InterPro IPR006415 P-type ATPase, subfamily IIIB
67 832 CDD cd02077 P-type_ATPase_Mg
67 832 InterPro IPR006415 P-type ATPase, subfamily IIIB
714 736 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
127 408 NCBIfam TIGR01494 HAD-IC family P-type ATPase
127 408 InterPro IPR001757 P-type ATPase
610 732 NCBIfam TIGR01494 HAD-IC family P-type ATPase
610 732 InterPro IPR001757 P-type ATPase
772 795 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
319 346 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
826 836 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
807 825 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
159 262 Gene3D G3DSA:2.70.150.10 -
377 383 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
377 383 InterPro IPR018303 P-type ATPase, phosphorylation site
836 858 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GQU9
AlphaFold full sequence Viewing
ColabFold KP13_01287
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
68 0.249
1 0.069
66 0.012
70 0.001

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 6.9 0.298
2 5.71 0.229
3 5.66 0.226
4 5.61 0.224
5 5.15 0.196

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

65 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ALF P05024 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
CLR Q08DA1 386.7 Da LogP 7.39 TPSA 20.2 1 viol. ✓ Clean CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3…
EFO P05024 791.1 Da LogP 5.88 TPSA 180.0 3 viol. ✓ Clean CC[C@@H]\1CC[C@H]2[C@H]([C@H]([C@@H]([C@]3(O2)C…
MF4 P05024 100.3 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-2](F)(F)F
OBN Q08DA1 584.7 Da LogP -1.51 TPSA 206.6 3 viol. ✓ Clean C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@H]2C[C@…
PC1 P05024 790.2 Da LogP 12.17 TPSA 111.2 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)([O-])…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.