Protein profile

KP13_00446

Sensor histidine kinase/response regulator

Genome: KpKP13

Gene: AHE46820.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GH16
Amino acids 761
Annotations 8
Features 52
PDB binders 5
Druggability 0.795

Overview

Basic information about this protein and its source genome.

Accession
KP13_00446
Gene
AHE46820.1
Status
annotated
Amino acids
761
Structure source
AlphaFold + ColabFold
GO
GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it. GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
80.67

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.795
Structure A0A0H3GH16
Pocket Pocket 2
P2Rank 0.822
Structure A0A0H3GH16
Pocket Pocket 1
ColabFold model
FPocket 0.657 · Pocket 33
P2Rank 0.866 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 48 / 4744 genomes with a hit
Normalized 0.01

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
  • GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
  • GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
  • GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Sequence Features

Domain/signature hits from InterPro and related databases.

52 records
Show feature table
Start End DB Term Name
315 368 ProSiteProfiles PS50885 HAMP domain profile.
315 368 InterPro IPR003660 HAMP domain
16 38 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
321 362 Pfam PF00672 HAMP domain
321 362 InterPro IPR003660 HAMP domain
39 292 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
646 754 Pfam PF00072 Response regulator receiver domain
646 754 InterPro IPR001789 Signal transduction response regulator, receiver domain
397 462 SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase
397 462 InterPro IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily
315 761 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
293 314 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
466 630 Gene3D G3DSA:3.30.565.10 -
466 630 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
315 368 SMART SM00304 HAMP_11
321 365 SUPERFAMILY SSF158472 HAMP domain-like
402 464 SMART SM00388 HisKA_10
402 464 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
644 758 ProSiteProfiles PS50110 Response regulatory domain profile.
644 758 InterPro IPR001789 Signal transduction response regulator, receiver domain
15 37 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
643 754 SMART SM00448 REC_2
643 754 InterPro IPR001789 Signal transduction response regulator, receiver domain
1 15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
373 393 Coils Coil Coil
644 760 Gene3D G3DSA:3.40.50.2300 -
409 623 ProSiteProfiles PS50109 Histidine kinase domain profile.
409 623 InterPro IPR005467 Histidine kinase domain
273 371 Gene3D G3DSA:6.10.340.10 -
296 627 PANTHER PTHR43065 SENSOR HISTIDINE KINASE
455 625 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
455 625 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
645 759 SUPERFAMILY SSF52172 CheY-like
645 759 InterPro IPR011006 CheY-like superfamily
321 362 CDD cd06225 HAMP
505 623 SMART SM00387 HKATPase_4
505 623 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
259 279 Coils Coil Coil
506 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
506 621 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
552 566 PRINTS PR00344 Bacterial sensor protein C-terminal signature
552 566 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
570 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature
570 580 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
583 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature
583 601 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
607 620 PRINTS PR00344 Bacterial sensor protein C-terminal signature
607 620 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
394 463 Gene3D G3DSA:1.10.287.130 -
400 460 CDD cd00082 HisKA
400 460 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
291 313 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GH16
AlphaFold full sequence Viewing
ColabFold KP13_00446
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.795
64 0.661
59 0.595

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 11.9 0.63
2 3.37 0.12
3 1.69 0.029
4 1.18 0.01

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

55 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ANP P0AE82 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
C2E Q9X688 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…
EMC Q9X180 229.7 Da LogP 0.97 TPSA 0.0 ✓ Ro5 ✓ Clean CC[Hg+]
EMT Q9X180 382.8 Da LogP 2.91 TPSA 37.3 ✓ Ro5 ✓ Clean CC[Hg]Sc1ccccc1C(=O)O
PG0 P71815 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.