Protein profile

KP13_01723

Lysophospholipase L2

Genome: KpKP13

Gene: AHE46973.1 pldB Structure source: AlphaFold + ColabFold UniProt A0A0H3GGK6
Amino acids 330
Annotations 4
Features 8
PDB binders 7
Druggability 0.989

Overview

Basic information about this protein and its source genome.

Accession
KP13_01723
Gene
AHE46973.1 pldB
Status
annotated
Amino acids
330
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
96.15

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.989
Structure A0A0H3GGK6
Pocket Pocket 12
P2Rank 0.889
Structure A0A0H3GGK6
Pocket Pocket 1
ColabFold model
FPocket 0.652 · Pocket 9
P2Rank 0.753 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 101 / 4744 genomes with a hit
Normalized 0.021

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 3 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

3
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0004622 Catalysis of the reaction: a 1-acyl-sn-glycero-3-phosphocholine + H2O = a fatty acid + H+ + sn-glycerol 3-phosphocholine.
  • GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Sequence Features

Domain/signature hits from InterPro and related databases.

8 records
Show feature table
Start End DB Term Name
25 330 Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
25 330 InterPro IPR029058 Alpha/Beta hydrolase fold
17 329 SUPERFAMILY SSF53474 alpha/beta-Hydrolases
17 329 InterPro IPR029058 Alpha/Beta hydrolase fold
52 312 Pfam PF12146 Serine aminopeptidase, S33
52 312 InterPro IPR022742 Serine aminopeptidase, S33
55 328 PANTHER PTHR11614 PHOSPHOLIPASE-RELATED
24 330 FunFam G3DSA:3.40.50.1820:FF:000020 Lysophospholipase L2

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GGK6
AlphaFold full sequence Viewing
ColabFold KP13_01723
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
12 0.989

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 21.28 0.868
2 4.16 0.168
3 2.28 0.057
4 1.26 0.013

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

157 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
9JX Q99685 467.0 Da LogP 4.03 TPSA 56.8 ✓ Ro5 ✓ Clean c1ccc(c(c1)c2cccc(c2)N3C[C@@H](CC3=O)N4CCN(CC4)…
C0S Q99685 395.3 Da LogP 3.77 TPSA 68.5 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc(on2)C3CN(C3)C(=O)OC(C(F)(F)F)C(F…
E3A Q99685 384.4 Da LogP 1.86 TPSA 84.7 ✓ Ro5 ✓ Clean c1cc(ccc1n2ccc(n2)C3[C@H]4[C@@H]3CN(C4)C(=O)ON5…
F4P Q99685 383.4 Da LogP 2.93 TPSA 54.3 ✓ Ro5 ✓ Clean c1cc(ccc1C(c2ccc(cc2)F)N3CCN(CC3)C(=O)n4cncn4)F
XOV Q99685 396.8 Da LogP 2.99 TPSA 67.9 ✓ Ro5 ✓ Clean c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)C3CC4(C3)COC(=O…
XP7 Q99685 382.9 Da LogP 3.16 TPSA 58.6 ✓ Ro5 ✓ Clean c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)CC[C@@H]3CCC(=O…
XPD Q99685 418.9 Da LogP 3.74 TPSA 67.9 ✓ Ro5 ✓ Clean c1cc2c(cc1C(=O)N3CCC(CC3)COc4ccc(cc4Cl)F)NC(=O)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.