Protein profile

KP13_00567

Metallo-dependent phosphatase

Genome: KpKP13

Gene: AHE47042.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GLG5
Amino acids 518
Annotations 8
Features 35
PDB binders 17
Druggability 0.692

Overview

Basic information about this protein and its source genome.

Accession
KP13_00567
Gene
AHE47042.1
Status
annotated
Amino acids
518
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
31.05
Human E-value
5.56e-17
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Periplasmic
ColabFold pLDDT
96.5

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.692
Structure A0A0H3GLG5
Pocket Pocket 1
P2Rank 0.887
Structure A0A0H3GLG5
Pocket Pocket 1
ColabFold model
FPocket 0.834 · Pocket 1
P2Rank 0.869 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 22 / 4744 genomes with a hit
Normalized 0.005

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0009166 The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.
  • GO:0046872 Binding to a metal ion.
  • GO:0016788 Catalysis of the hydrolysis of any ester bond.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0030288 The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
  • GO:0008253 Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
  • GO:0008768 Catalysis of the reaction: UDP-sugar + H2O = UMP + sugar 1-phosphate.

Sequence Features

Domain/signature hits from InterPro and related databases.

35 records
Show feature table
Start End DB Term Name
8 16 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
1 20 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 20 Phobius SIGNAL_PEPTIDE Signal peptide region
21 518 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
21 507 PANTHER PTHR11575 5'-NUCLEOTIDASE-RELATED
21 507 InterPro IPR006179 5'-Nucleotidase/apyrase
325 514 SUPERFAMILY SSF55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
325 514 InterPro IPR036907 5'-Nucleotidase, C-terminal domain superfamily
102 113 ProSitePatterns PS00786 5'-nucleotidase signature 2.
102 113 InterPro IPR006146 5'-Nucleotidase, conserved site
1 7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
328 518 Gene3D G3DSA:3.90.780.10 -
328 518 InterPro IPR036907 5'-Nucleotidase, C-terminal domain superfamily
23 296 CDD cd00845 MPP_UshA_N_like
18 327 Gene3D G3DSA:3.60.21.10 -
18 327 InterPro IPR029052 Metallo-dependent phosphatase-like
331 476 Pfam PF02872 5'-nucleotidase, C-terminal domain
331 476 InterPro IPR008334 5'-Nucleotidase, C-terminal
450 469 PRINTS PR01607 Apyrase family signature
450 469 InterPro IPR006179 5'-Nucleotidase/apyrase
21 39 PRINTS PR01607 Apyrase family signature
21 39 InterPro IPR006179 5'-Nucleotidase/apyrase
380 403 PRINTS PR01607 Apyrase family signature
380 403 InterPro IPR006179 5'-Nucleotidase/apyrase
235 258 PRINTS PR01607 Apyrase family signature
235 258 InterPro IPR006179 5'-Nucleotidase/apyrase
200 217 PRINTS PR01607 Apyrase family signature
200 217 InterPro IPR006179 5'-Nucleotidase/apyrase
1 20 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
18 326 FunFam G3DSA:3.60.21.10:FF:000030 Trifunctional nucleotide phosphoesterase protein YfkN
17 20 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
24 252 Pfam PF00149 Calcineurin-like phosphoesterase
24 252 InterPro IPR004843 Calcineurin-like phosphoesterase domain, ApaH type
21 326 SUPERFAMILY SSF56300 Metallo-dependent phosphatases
21 326 InterPro IPR029052 Metallo-dependent phosphatase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GLG5
AlphaFold full sequence Viewing
ColabFold KP13_00567
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.692
12 0.415

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 17.58 0.805
2 10.22 0.549
3 4.27 0.175
4 2.11 0.048
5 1.5 0.021

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

167 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0XE P21589 446.4 Da LogP 0.14 TPSA 187.1 1 viol. Alert c1ccc(cc1)C2=CC(=O)c3c(cc(c(c3O)O)O[C@H]4[C@@H]…
0YQ P21589 473.4 Da LogP -5.14 TPSA 240.6 2 viol. ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
A12 P44569 425.2 Da LogP -1.64 TPSA 223.4 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ADN P21589 267.2 Da LogP -1.98 TPSA 139.5 ✓ Ro5 ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
CTN A0A0H2VD83 243.2 Da LogP -2.56 TPSA 130.8 ✓ Ro5 ✓ Clean C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
KYK P21589 515.4 Da LogP 0.39 TPSA 209.4 3 viol. ✓ Clean c1ccc(cc1)CNc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H…
KYW P21589 563.8 Da LogP 1.07 TPSA 200.6 2 viol. ✓ Clean CN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@@H](…
NYW P21589 440.2 Da LogP -2.05 TPSA 249.4 2 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
NYZ P21589 441.2 Da LogP -2.34 TPSA 243.3 2 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(C…
O02 P21589 455.3 Da LogP -2.35 TPSA 261.4 2 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
O05 P21589 510.4 Da LogP -3.25 TPSA 243.2 3 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
O1T P21589 580.8 Da LogP 2.35 TPSA 196.5 2 viol. ✓ Clean C[C@@H](c1ccc(cc1)F)Nc2cc(nc3c2cnn3[C@H]4[C@@H]…
OO2 P21589 463.8 Da LogP 0.61 TPSA 172.1 ✓ Ro5 ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COC…
OO5 P21589 463.8 Da LogP 0.61 TPSA 172.1 ✓ Ro5 ✓ Clean c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)C…
QCQ P21589 551.8 Da LogP 2.03 TPSA 189.1 1 viol. ✓ Clean c1ccc(cc1)CNc2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@H]([C…
THM Q5SIP1 242.2 Da LogP -1.51 TPSA 104.6 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
URI A0A0H2VD83 244.2 Da LogP -2.85 TPSA 124.8 ✓ Ro5 ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.