Protein profile

KP13_00008

D-ribose pyranase

Genome: KpKP13

Gene: AHE47119.1 rbsD Structure source: AlphaFold + ColabFold UniProt A0A0H3GG46
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Amino acids 139
Annotations 8
Features 10
PDB binders 0
Druggability 0.366

Overview

Basic information about this protein and its source genome.

Accession
KP13_00008
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE47119.1 rbsD
Status
annotated
Amino acids
139
Structure source
AlphaFold + ColabFold
EC
5.4.99.62
GO
GO:0005996 The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. GO:0016853 Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. GO:0048029 Binding to a monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. GO:0016872 The catalysis of certain rearrangements of a molecule to break or form a ring. GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. GO:0062193 Catalysis of the reactions: beta-D-ribopyranose = beta-D-ribofuranose, and beta-allofuranose = beta-allopyranose.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
98.05

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.366
Structure A0A0H3GG46
Pocket Pocket 1
P2Rank 0.048
Structure A0A0H3GG46
Pocket Pocket 1
ColabFold model
FPocket 0.417 · Pocket 4
P2Rank 0.019 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 118 / 4744 genomes with a hit
Normalized 0.025

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0005996 The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
  • GO:0016853 Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
  • GO:0048029 Binding to a monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
  • GO:0016872 The catalysis of certain rearrangements of a molecule to break or form a ring.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0062193 Catalysis of the reactions: beta-D-ribopyranose = beta-D-ribofuranose, and beta-allofuranose = beta-allopyranose.
  • GO:0019303 The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose).

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
8 136 Gene3D G3DSA:3.40.1650.10 -
8 136 InterPro IPR023750 RbsD-like superfamily
1 139 PANTHER PTHR37831 D-RIBOSE PYRANASE
1 139 InterPro IPR023064 D-ribose pyranase
1 139 Hamap MF_01661 D-ribose pyranase [rbsD].
1 138 Pfam PF05025 RbsD / FucU transport protein family
1 138 InterPro IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU
1 139 SUPERFAMILY SSF102546 RbsD-like
1 139 InterPro IPR023750 RbsD-like superfamily
8 136 FunFam G3DSA:3.40.1650.10:FF:000002 D-ribose pyranase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GG46
AlphaFold — — full sequence — Viewing
ColabFold KP13_00008
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.366

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.21 0.011
2 1.07 0.007