Protein profile

KP13_03088

F-type conjugal transfer protein TraA

Genome: KpKP13

Gene: AHE47277.1 Structure source: AlphaFold + ColabFold UniProt A0A430I2V4
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Amino acids 122
Annotations 0
Features 12
PDB binders 0
Druggability 0.787

Overview

Basic information about this protein and its source genome.

Accession
KP13_03088
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE47277.1
Status
annotated
Amino acids
122
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
53.38

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.787
Structure A0A430I2V4
Pocket Pocket 10
P2Rank 0.017
Structure A0A430I2V4
Pocket Pocket 1
ColabFold model
FPocket 0.604 · Pocket 5
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 4 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

12 records
Show feature table
Start End DB Term Name
32 42 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
65 87 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
94 116 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
43 50 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
32 50 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 50 Phobius SIGNAL_PEPTIDE Signal peptide region
88 93 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
51 65 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
117 122 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
66 87 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 31 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
94 116 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A430I2V4
AlphaFold — — full sequence — Viewing
ColabFold KP13_03088
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
10 0.787
1 0.565