Protein profile

KP13_04161

DNA-binding protein H-NS

Genome: KpKP13

Gene: AHE47512.1 hns Structure source: AlphaFold + ColabFold UniProt A0A0C7KBH2
Export view
Amino acids 132
Annotations 11
Features 16
PDB binders 0
Druggability 0.575

Overview

Basic information about this protein and its source genome.

Accession
KP13_04161
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE47512.1 hns
Status
annotated
Amino acids
132
Structure source
AlphaFold + ColabFold
GO
GO:0030527 The action of a molecule that contributes to the structural integrity of chromatin. GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). GO:0046983 The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. GO:0009295 The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
64.444
DEG E-value
3.6300000000000003e-47
Localization
Cytoplasmic
ColabFold pLDDT
84.61

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.575
Structure A0A0C7KBH2
Pocket Pocket 6
P2Rank
Structure A0A0C7KBH2
Pocket No pockets
ColabFold model
FPocket 0.619 · Pocket 7
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 116 / 4744 genomes with a hit
Normalized 0.024

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

11 GO

Gene Ontology (GO)

11
  • GO:0030527 The action of a molecule that contributes to the structural integrity of chromatin.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
  • GO:0046983 The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0009295 The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.
  • GO:0032993 A macromolecular complex containing both protein and DNA molecules.
  • GO:0003681 Binding to DNA in a bent conformation.
  • GO:0001217 A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.
  • GO:0003680 Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
  • GO:0000976 Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
38 58 Coils Coil Coil
40 126 Pfam PF00816 H-NS histone family
40 126 InterPro IPR001801 Histone-like protein H-NS
85 132 SMART SM00528 hnsneu2
85 132 InterPro IPR027444 Histone-like protein H-NS, C-terminal domain
1 83 FunFam G3DSA:1.10.287.1050:FF:000001 DNA-binding protein
89 132 Gene3D G3DSA:4.10.430.10 -
89 132 InterPro IPR037150 Histone-like protein H-NS, C-terminal domain superfamily
90 132 SUPERFAMILY SSF81273 H-NS histone-like proteins
89 132 FunFam G3DSA:4.10.430.10:FF:000001 DNA-binding protein
1 132 PIRSF PIRSF002096 HnS
1 132 InterPro IPR001801 Histone-like protein H-NS
1 81 Gene3D G3DSA:1.10.287.1050 -
1 81 InterPro IPR027454 Histone-like protein H-NS, N-terminal
23 132 PANTHER PTHR38097 -
2 58 SUPERFAMILY SSF81273 H-NS histone-like proteins

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0C7KBH2
AlphaFold — — full sequence — Viewing
ColabFold KP13_04161
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.575
1 0.031
5 0.001
2 0.0