Ligand profile

CHEMBL5913187

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_03610 — Bifunctional protein UshA

Via homolog UniProt P21589 Formula C₂₆H₂₆ClN₅O₉
pchembl 9.00 ~1.0 nM
Mol. weight 587.97 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL5913187
UniProt (similar protein)
P21589
pchembl
9.000 (~1.0 nM)
Target protein
KP13_03610

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 587.97 Da
LogP (Crippen) -0.30
H-bond donors 5
H-bond acceptors 12
TPSA 200.59 Ų
Rotatable bonds 10
Aromatic rings 3 / 5
Heavy atoms 41
Fraction sp³ C 0.42
Formula C₂₆H₂₆ClN₅O₉

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 200.6
  • −1 ≤ LogP ≤ 5 -0.30
Lipinski's Rule of Five Fail 2 violations
  • MW ≤ 500 Da 588.0
  • LogP ≤ 5 -0.30
  • H-bond donors ≤ 5 5
  • H-bond acceptors ≤ 10 12
Veber's rules Fail
  • Rotatable bonds ≤ 10 10
  • TPSA ≤ 140 Ų 200.6
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
C#C[C@@]1(O)[C@@H](COC(Cc2ccccc2)(C(=O)O)C(=O)O)O[C@@H](n2cnc3c(N4CC(CO)C4)nc(Cl)nc32)[C@@H]1O
InChI 
InChI=1S/C26H26ClN5O9/c1-2-25(39)16(12-40-26(22(35)36,23(37)38)8-14-6-4-3-5-7-14)41-21(18(25)34)32-13-28-17-19(29-24(27)30-20(17)32)31-9-15(10-31)11-33/h1,3-7,13,15-16,18,21,33-34,39H,8-12H2,(H,35,36)(H,37,38)/t16-,18+,21-,25-/m1/s1
InChIKey 
XOFARXCVMADWTP-ZSZPVPIUSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Activity
1070441
Curation
pdb_similarity_tanimoto
Binding sites
PF00149' 'PF02872

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_03610.

PDB 15

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)