Protein profile

KP13_03610

Bifunctional protein UshA

Genome: KpKP13

Gene: ushA AHE45953.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GP59
Amino acids 550
Annotations 8
Features 40
PDB binders 15
Druggability 0.968

Overview

Basic information about this protein and its source genome.

Accession
KP13_03610
Gene
ushA AHE45953.1
Status
annotated
Amino acids
550
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
30.337
Human E-value
1.75e-13
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Periplasmic
ColabFold pLDDT
94.58

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.968
Structure A0A0H3GP59
Pocket Pocket 1
P2Rank 0.957
Structure A0A0H3GP59
Pocket Pocket 1
ColabFold model
FPocket 0.925 · Pocket 2
P2Rank 0.933 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 127 / 4744 genomes with a hit
Normalized 0.027

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0009166 The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.
  • GO:0046872 Binding to a metal ion.
  • GO:0016788 Catalysis of the hydrolysis of any ester bond.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0030288 The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
  • GO:0008253 Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
  • GO:0008768 Catalysis of the reaction: UDP-sugar + H2O = UMP + sugar 1-phosphate.

Sequence Features

Domain/signature hits from InterPro and related databases.

40 records
Show feature table
Start End DB Term Name
1 25 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
24 550 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
364 508 Pfam PF02872 5'-nucleotidase, C-terminal domain
364 508 InterPro IPR008334 5'-Nucleotidase, C-terminal
34 46 ProSitePatterns PS00785 5'-nucleotidase signature 1.
34 46 InterPro IPR006146 5'-Nucleotidase, conserved site
238 261 PRINTS PR01607 Apyrase family signature
238 261 InterPro IPR006179 5'-Nucleotidase/apyrase
417 440 PRINTS PR01607 Apyrase family signature
417 440 InterPro IPR006179 5'-Nucleotidase/apyrase
207 224 PRINTS PR01607 Apyrase family signature
207 224 InterPro IPR006179 5'-Nucleotidase/apyrase
283 303 PRINTS PR01607 Apyrase family signature
283 303 InterPro IPR006179 5'-Nucleotidase/apyrase
484 503 PRINTS PR01607 Apyrase family signature
484 503 InterPro IPR006179 5'-Nucleotidase/apyrase
32 50 PRINTS PR01607 Apyrase family signature
32 50 InterPro IPR006179 5'-Nucleotidase/apyrase
1 23 Phobius SIGNAL_PEPTIDE Signal peptide region
363 549 FunFam G3DSA:3.90.780.10:FF:000003 Protein UshA
1 6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
1 25 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
26 362 Gene3D G3DSA:3.60.21.10 -
26 362 InterPro IPR029052 Metallo-dependent phosphatase-like
7 18 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
23 539 PANTHER PTHR11575 5'-NUCLEOTIDASE-RELATED
23 539 InterPro IPR006179 5'-Nucleotidase/apyrase
363 543 SUPERFAMILY SSF55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
363 543 InterPro IPR036907 5'-Nucleotidase, C-terminal domain superfamily
109 120 ProSitePatterns PS00786 5'-nucleotidase signature 2.
109 120 InterPro IPR006146 5'-Nucleotidase, conserved site
34 320 CDD cd07405 MPP_UshA_N
19 23 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
363 549 Gene3D G3DSA:3.90.780.10 -
363 549 InterPro IPR036907 5'-Nucleotidase, C-terminal domain superfamily
26 362 FunFam G3DSA:3.60.21.10:FF:000025 Protein UshA
27 360 SUPERFAMILY SSF56300 Metallo-dependent phosphatases
27 360 InterPro IPR029052 Metallo-dependent phosphatase-like
35 254 Pfam PF00149 Calcineurin-like phosphoesterase
35 254 InterPro IPR004843 Calcineurin-like phosphoesterase domain, ApaH type

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GP59
AlphaFold full sequence Viewing
ColabFold KP13_03610
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.968

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 30.01 0.933
2 15.56 0.756
3 3.73 0.142

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

165 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0XE P21589 446.4 Da LogP 0.14 TPSA 187.1 1 viol. Alert c1ccc(cc1)C2=CC(=O)c3c(cc(c(c3O)O)O[C@H]4[C@@H]…
0YQ P21589 473.4 Da LogP -5.14 TPSA 240.6 2 viol. ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
A12 P21589 425.2 Da LogP -1.64 TPSA 223.4 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ADN P21589 267.2 Da LogP -1.98 TPSA 139.5 ✓ Ro5 ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
MTN P07024 264.4 Da LogP 1.82 TPSA 57.3 ✓ Ro5 ✓ Clean CC1(C=C(C(N1[O])(C)C)CSS(=O)(=O)C)C
NYW P21589 440.2 Da LogP -2.05 TPSA 249.4 2 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
NYZ P21589 441.2 Da LogP -2.34 TPSA 243.3 2 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(C…
O02 P21589 455.3 Da LogP -2.35 TPSA 261.4 2 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
O05 P21589 510.4 Da LogP -3.25 TPSA 243.2 3 viol. ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP…
O1T P21589 580.8 Da LogP 2.35 TPSA 196.5 2 viol. ✓ Clean C[C@@H](c1ccc(cc1)F)Nc2cc(nc3c2cnn3[C@H]4[C@@H]…
OO2 P21589 463.8 Da LogP 0.61 TPSA 172.1 ✓ Ro5 ✓ Clean c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COC…
OO5 P21589 463.8 Da LogP 0.61 TPSA 172.1 ✓ Ro5 ✓ Clean c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)C…
QCQ P21589 551.8 Da LogP 2.03 TPSA 189.1 1 viol. ✓ Clean c1ccc(cc1)CNc2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@H]([C…
THM Q5SIP1 242.2 Da LogP -1.51 TPSA 104.6 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
WO4 P07024 247.8 Da LogP -2.62 TPSA 80.3 ✓ Ro5 ✓ Clean [O-][W](=O)(=O)[O-]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.