Ligand profile

CHEMBL5769060

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_31805 — Sulfur carrier protein ThiS adenylyltransferase

Via homolog UniProt P22314 Formula C₁₉H₁₉ClF₃N₅O₅S₂
pchembl 6.26 ~549.5 nM
Mol. weight 553.97 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL5769060
UniProt (similar protein)
P22314
pchembl
6.260 (~549.5 nM)
Target protein
KP13_31805

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 553.97 Da
LogP (Crippen) 2.40
H-bond donors 4
H-bond acceptors 10
TPSA 152.07 Ų
Rotatable bonds 7
Aromatic rings 3 / 4
Heavy atoms 35
Fraction sp³ C 0.37
Formula C₁₉H₁₉ClF₃N₅O₅S₂

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 152.1
  • −1 ≤ LogP ≤ 5 2.40
Lipinski's Rule of Five Pass 1 violation
  • MW ≤ 500 Da 554.0
  • LogP ≤ 5 2.40
  • H-bond donors ≤ 5 4
  • H-bond acceptors ≤ 10 10
Veber's rules Fail
  • Rotatable bonds ≤ 10 7
  • TPSA ≤ 140 Ų 152.1
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
NS(=O)(=O)OC[C@H]1C[C@@H](Nc2c(Cl)cnc3cc(-c4cccc(SC(F)(F)F)c4)nn23)[C@H](O)[C@@H]1O
InChI 
InChI=1S/C19H19ClF3N5O5S2/c20-12-7-25-15-6-13(9-2-1-3-11(4-9)34-19(21,22)23)27-28(15)18(12)26-14-5-10(16(29)17(14)30)8-33-35(24,31)32/h1-4,6-7,10,14,16-17,26,29-30H,5,8H2,(H2,24,31,32)/t10-,14-,16-,17+/m1/s1
InChIKey 
RKNTWRDJZIZVTB-AIPUMIGSSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Activity
685869.0
Curation
pdb_similarity_tanimoto
Binding sites
PF00899

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_31805.

PDB 9

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 29

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)