Protein profile
PA5142
imidazole glycerol phosphate synthase subunit HisH
Genome: NC_002516.2
Overview
Basic information about this protein and its source genome.
- Accession
- PA5142
- Gene
- PA5142 hisH1
- Status
- annotated
- Amino acids
- 213
- Structure source
- AlphaFold
Target profile
Computed evidence for target prioritization.
- Human off-target
- No hit
- Gut microbiome off-target
- hit
- Essential (DEG)
- Y
- Localization
- Cytoplasmic
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
6- GO:0009382 Complex that possesses imidazoleglycerol-phosphate synthase activity.
- GO:0004359 Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH4+.
- GO:0000107 Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + aminoimidazole carboxamide ribonucleotide + L-glutamate + 2 H+.
- GO:0016829 Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
- GO:0000105 The chemical reactions and pathways resulting in the formation of L-histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
- GO:0016763 Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
Sequence Features
Domain/signature hits from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 3 | 211 | PIRSF | PIRSF000495 | Amidotransf_HisH |
| 3 | 211 | InterPro | IPR010139 | Imidazole glycerol phosphate synthase, subunit H |
| 4 | 213 | ProSiteProfiles | PS51273 | Glutamine amidotransferase type 1 domain profile. |
| 5 | 208 | NCBIfam | TIGR01855 | imidazole glycerol phosphate synthase subunit HisH |
| 5 | 208 | InterPro | IPR010139 | Imidazole glycerol phosphate synthase, subunit H |
| 3 | 208 | PANTHER | PTHR42701 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH |
| 3 | 208 | InterPro | IPR010139 | Imidazole glycerol phosphate synthase, subunit H |
| 2 | 212 | FunFam | G3DSA:3.40.50.880:FF:000023 | Imidazole glycerol phosphate synthase subunit HisH |
| 7 | 207 | Pfam | PF00117 | Glutamine amidotransferase class-I |
| 7 | 207 | InterPro | IPR017926 | Glutamine amidotransferase |
| 1 | 212 | Gene3D | G3DSA:3.40.50.880 | - |
| 1 | 212 | InterPro | IPR029062 | Class I glutamine amidotransferase-like |
| 5 | 207 | CDD | cd01748 | GATase1_IGP_Synthase |
| 5 | 207 | InterPro | IPR010139 | Imidazole glycerol phosphate synthase, subunit H |
| 4 | 209 | Hamap | MF_00278 | Imidazole glycerol phosphate synthase subunit HisH [hisH]. |
| 4 | 209 | InterPro | IPR010139 | Imidazole glycerol phosphate synthase, subunit H |
| 2 | 209 | SUPERFAMILY | SSF52317 | Class I glutamine amidotransferase-like |
| 2 | 209 | InterPro | IPR029062 | Class I glutamine amidotransferase-like |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
No pockets are loaded yet for the displayed AlphaFold model PA5142 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.
Loading 3D structure...
Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA5142
|
AlphaFold | — | — | full sequence | — | Viewing |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| GUO | Q9X0C8 | 577.3 Da LogP -4.48 TPSA 318.2 | 3 viol. | ✓ Clean |
c1nc(c(n1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O…
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC2390999 | 0.655 | 275.3 Da LogP -1.99 TPSA 172.8 | ✓ Ro5 | ✓ Clean |
NC(=O)CC[C@H](NC(=O)CC[C@H](N)C(=O)O)C(=O)O
|
| ZINC103317774 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@H](O)[…
|
| ZINC12501010 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC22048479 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@H](O)[…
|
| ZINC3869390 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC3869391 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@@H](COP(=O)(O)O)[C@@H](O…
|
| ZINC3869392 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC3869393 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@@H](COP(=O)(O)O)[C@@H](O…
|
| ZINC4096500 | 0.639 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC4096530 | 0.631 | 366.2 Da LogP -2.72 TPSA 206.5 | 1 viol. | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC3055005 | 0.591 | 204.2 Da LogP -0.63 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCC[C@H](N)C(=O)O)C(=O)O
|
| ZINC3055007 | 0.591 | 204.2 Da LogP -0.63 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC3055010 | 0.591 | 204.2 Da LogP -0.63 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@H](CCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC2391099 | 0.586 | 274.3 Da LogP -2.59 TPSA 178.6 | ✓ Ro5 | ✓ Clean |
NC(=O)CC[C@H](N)C(=O)N[C@@H](CCC(N)=O)C(=O)O
|
| ZINC2556600 | 0.567 | 217.2 Da LogP -1.83 TPSA 135.5 | ✓ Ro5 | ✓ Clean |
C[C@H](NC(=O)[C@@H](N)CCC(N)=O)C(=O)O
|
| ZINC1555366 | 0.565 | 232.3 Da LogP 0.15 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCCC[C@H](N)C(=O)O)C(=O)O
|
| ZINC1555367 | 0.565 | 232.3 Da LogP 0.15 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC1555369 | 0.565 | 232.3 Da LogP 0.15 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@H](CCCCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC1720127 | 0.565 | 218.3 Da LogP -0.24 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCC[C@H](N)C(=O)O)C(=O)O
|
| ZINC1720128 | 0.565 | 218.3 Da LogP -0.24 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC1720130 | 0.565 | 218.3 Da LogP -0.24 TPSA 126.6 | ✓ Ro5 | ✓ Clean |
N[C@H](CCCCC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC4096533 | 0.563 | 339.2 Da LogP -2.11 TPSA 197.6 | 1 viol. | ✓ Clean |
Nc1c(C(=O)O)ncn1[C@@H]1O[C@H](COP(=O)(O)O)[C@@H…
|
| ZINC88466335 | 0.563 | 338.2 Da LogP -2.71 TPSA 203.4 | 1 viol. | ✓ Clean |
NC(=O)c1c(N)ncn1[C@@H]1O[C@H](COP(=O)(O)O)[C@@H…
|
| ZINC1581634 | 0.552 | 203.2 Da LogP -2.22 TPSA 135.5 | ✓ Ro5 | ✓ Clean |
NC(=O)CC[C@H](N)C(=O)NCC(=O)O
|
| ZINC5500823 | 0.552 | 203.2 Da LogP -2.22 TPSA 135.5 | ✓ Ro5 | ✓ Clean |
NC(=O)CC[C@@H](N)C(=O)NCC(=O)O
|
| ZINC4096553 | 0.535 | 454.3 Da LogP -3.15 TPSA 264.0 | 2 viol. | ✓ Clean |
Nc1c(C(=O)N[C@@H](CC(=O)O)C(=O)O)ncn1[C@@H]1O[C…
|
| ZINC12402859 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC12501004 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC1562441 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC22066422 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@H](O)[…
|
| ZINC22066425 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@H](COP(=O)(O)O)[C@H](O)[…
|
| ZINC2560992 | 0.531 | 275.3 Da LogP -1.99 TPSA 172.8 | ✓ Ro5 | ✓ Clean |
NC(=O)CC[C@H](N)C(=O)N[C@@H](CCC(=O)O)C(=O)O
|
| ZINC5372441 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)…
|
| ZINC5372445 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@@H](COP(=O)(O)O)[C@@H](O…
|
| ZINC5372450 | 0.531 | 324.2 Da LogP -2.89 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
NC(=O)c1ncn([C@@H]2O[C@@H](COP(=O)(O)O)[C@@H](O…
|
| ZINC2106542 | 0.519 | 245.3 Da LogP 1.99 TPSA 100.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCCCCCCC(=O)O)C(=O)O
|
| ZINC2106543 | 0.519 | 245.3 Da LogP 1.99 TPSA 100.6 | ✓ Ro5 | ✓ Clean |
N[C@H](CCCCCCCCCC(=O)O)C(=O)O
|
| ZINC2108713 | 0.519 | 217.3 Da LogP 1.21 TPSA 100.6 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCCCCCCC(=O)O)C(=O)O
|
| ZINC2108714 | 0.519 | 217.3 Da LogP 1.21 TPSA 100.6 | ✓ Ro5 | ✓ Clean |
N[C@H](CCCCCCCC(=O)O)C(=O)O
|
| ZINC1529737 | 0.517 | 218.2 Da LogP -1.23 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
C[C@@H](NC(=O)CC[C@H](N)C(=O)O)C(=O)O
|
| ZINC1576202 | 0.517 | 204.2 Da LogP -1.62 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
N[C@@H](CCC(=O)NCC(=O)O)C(=O)O
|
| ZINC2384790 | 0.517 | 218.2 Da LogP -1.23 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
C[C@H](NC(=O)CC[C@H](N)C(=O)O)C(=O)O
|
| ZINC2560745 | 0.517 | 218.2 Da LogP -1.23 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
C[C@@H](NC(=O)CC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC2560989 | 0.517 | 218.2 Da LogP -1.23 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
C[C@H](NC(=O)CC[C@@H](N)C(=O)O)C(=O)O
|
| ZINC3995565 | 0.517 | 204.2 Da LogP -1.62 TPSA 129.7 | ✓ Ro5 | ✓ Clean |
N[C@H](CCC(=O)NCC(=O)O)C(=O)O
|
| ZINC53683597 | 0.517 | 202.3 Da LogP -0.08 TPSA 95.4 | ✓ Ro5 | ✓ Clean |
CC(C)(C)OC(=O)[C@@H](N)CCC(N)=O
|
| ZINC56963153 | 0.517 | 202.3 Da LogP -0.08 TPSA 95.4 | ✓ Ro5 | ✓ Clean |
CC(C)(C)OC(=O)[C@H](N)CCC(N)=O
|
| ZINC5809524 | 0.508 | 324.2 Da LogP -3.05 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
Nc1ncn([C@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)[C@H]…
|
| ZINC5809525 | 0.508 | 324.2 Da LogP -3.05 TPSA 190.2 | ✓ Ro5 | ✓ Clean |
Nc1ncn([C@@H]2O[C@@H](COP(=O)(O)O)[C@@H](O)[C@H…
|
| ZINC16990100 | 0.507 | 364.3 Da LogP -1.16 TPSA 160.1 | ✓ Ro5 | ✓ Clean |
O=P(O)(O)OC[C@@H]1O[C@H](n2cnc3c(S)ncnc32)[C@H]…
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.