Protein target profile

KP13_00051

DNA gyrase subunit B

Genome: KpKP13 Gene: gyrB AHE41975.1 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3GXR6
Length 804
Pocket druggability 0.793
Direct ligand evidence 0 238 total records
Functional annotation 1 EC 8 GO
Target summary

Promising target candidate with multiple supporting evidence streams.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
26.422 Lower values reduce human off-target concern.
Human E-value
1.62e-30
Gut microbiome similarity
6.4% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
Y
DEG identity (%)
95.025 Higher values support similarity to known essential genes.
DEG E-value
0.0 Smaller values mean stronger essential-gene similarity.

Localization

Localization
Cytoplasmic

Structure confidence

ColabFold pLDDT
88.98 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.793
Structure A0A0H3GXR6
Pocket Pocket 3
P2Rank 0.859
Structure A0A0H3GXR6
Pocket Pocket 1
ColabFold model
FPocket 0.907 · Pocket 3
P2Rank 0.9 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 302 / 4744 genomes with a hit
Prevalence 6.4%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Chemistry

ChEMBL CBN ChEMBL CHEMBL3314588 ChEMBL CHEMBL2059380 ChEMBL CHEMBL4283208 ChEMBL CHEMBL4286573 ChEMBL CHEMBL4294536 ChEMBL CHEMBL4295081 ChEMBL CHEMBL2059379 ChEMBL CHEMBL3809400 ChEMBL CHEMBL4286625 ChEMBL CHEMBL4291061 ChEMBL CHEMBL2059196 ChEMBL CHEMBL4290062 ChEMBL 1YM ChEMBL CHEMBL3808756 ChEMBL CHEMBL4281775 ChEMBL CHEMBL4293447 ChEMBL CHEMBL4294467 ChEMBL CHEMBL4279382 ChEMBL NOV ChEMBL CHEMBL3736321 ChEMBL CHEMBL3741798 ChEMBL CHEMBL3809278 ChEMBL CHEMBL3810223 ChEMBL CHEMBL4278317 ChEMBL CHEMBL4279313 ChEMBL CHEMBL2059375 ChEMBL CHEMBL2152855 ChEMBL CHEMBL2205318 ChEMBL CHEMBL3736385 ChEMBL CHEMBL3739786 ChEMBL CHEMBL3741350 ChEMBL CHEMBL3808699 ChEMBL CHEMBL3809816 ChEMBL CHEMBL4289650 ChEMBL CHEMBL4289998 ChEMBL CHEMBL1923432 ChEMBL CHEMBL3735341 ChEMBL CHEMBL3741270 ChEMBL CHEMBL3809648 ChEMBL CHEMBL2059376 ChEMBL CHEMBL3739453 ChEMBL CHEMBL3739840 ChEMBL CHEMBL3742199 ChEMBL CHEMBL3735577 ChEMBL CHEMBL3741475 ChEMBL CHEMBL3736056 ChEMBL CHEMBL3808760 ChEMBL CHEMBL3810056 ChEMBL CHEMBL4163243 ChEMBL CHEMBL3235096 ChEMBL CHEMBL3314534 ChEMBL CHEMBL3314541 ChEMBL CHEMBL3741327 ChEMBL CHEMBL4286232 ChEMBL CHEMBL3314542 ChEMBL CHEMBL3735121 ChEMBL CHEMBL3739580 ChEMBL CHEMBL3739780 ChEMBL CHEMBL3808603 ChEMBL CHEMBL3809114 ChEMBL CHEMBL3314529 ChEMBL CHEMBL1275840 ChEMBL CHEMBL3314536 ChEMBL CHEMBL3735336 ChEMBL CHEMBL1275843 ChEMBL CHEMBL1275844 ChEMBL CHEMBL1923433 ChEMBL CHEMBL1923434 ChEMBL CHEMBL3739684 ChEMBL CHEMBL3809316 ChEMBL CHEMBL1275884 ChEMBL CHEMBL2059377 ChEMBL CHEMBL3808784 ChEMBL CHEMBL3329317 ChEMBL CHEMBL1275845 ChEMBL CHEMBL3736376 ChEMBL CHEMBL3741416 ChEMBL CHEMBL4161729 ChEMBL CHEMBL3740656 ChEMBL CHEMBL3235084 ChEMBL CHEMBL1275886 ChEMBL CHEMBL3903891 ChEMBL CHEMBL1275846 ChEMBL CHEMBL1275883 ChEMBL CHEMBL4160665 ChEMBL CHEMBL1923438 ChEMBL CHEMBL3809242 ChEMBL CHEMBL3898662 ChEMBL CHEMBL4162886 ChEMBL CHEMBL2059373 ChEMBL CHEMBL3235078 ChEMBL CHEMBL1275842 ChEMBL CHEMBL3329319 ChEMBL CHEMBL4175379 ChEMBL CHEMBL3736517 ChEMBL CHEMBL1275891 ChEMBL CHEMBL1275887 ChEMBL CHEMBL3736023 ChEMBL CHEMBL4176270

Sequence

Primary amino-acid sequence viewer.

MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVVTIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGETDKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRMERRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQHFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 8 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

8
  • GO:0006265 The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0005694 A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
  • GO:0003918 Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined, driven by ATP hydrolysis. The enzyme changes the linking number in multiples of 2.
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0046872 Binding to a metal ion.
  • GO:0006261 A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

76 records
Show feature table
Start End DB Term Name
220 392 FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B
1 220 Gene3D G3DSA:3.30.565.10 -
1 220 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
397 568 Gene3D G3DSA:3.40.50.670 -
397 568 InterPro IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal
5 804 NCBIfam TIGR01059 DNA gyrase subunit B
5 804 InterPro IPR011557 DNA gyrase, subunit B
732 793 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus
732 793 InterPro IPR002288 DNA gyrase B subunit, C-terminal
487 503 PRINTS PR00418 DNA topoisomerase II family signature
525 537 PRINTS PR00418 DNA topoisomerase II family signature
113 127 PRINTS PR00418 DNA topoisomerase II family signature
268 281 PRINTS PR00418 DNA topoisomerase II family signature
505 522 PRINTS PR00418 DNA topoisomerase II family signature
35 50 PRINTS PR00418 DNA topoisomerase II family signature
70 83 PRINTS PR00418 DNA topoisomerase II family signature
736 752 PRINTS PR00418 DNA topoisomerase II family signature
420 434 PRINTS PR00418 DNA topoisomerase II family signature
564 729 Pfam PF18053 DNA gyrase B subunit insert domain
564 729 InterPro IPR041423 DNA gyrase subunit B insert domain
418 532 CDD cd03366 TOPRIM_TopoIIA_GyrB
418 532 InterPro IPR034160 DNA gyrase subunit B, TOPRIM domain
470 479 PRINTS PR01159 DNA gyrase subunit B signature
470 479 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
757 769 PRINTS PR01159 DNA gyrase subunit B signature
757 769 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
196 209 PRINTS PR01159 DNA gyrase subunit B signature
196 209 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
312 328 PRINTS PR01159 DNA gyrase subunit B signature
312 328 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
773 789 PRINTS PR01159 DNA gyrase subunit B signature
773 789 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
5 15 PRINTS PR01159 DNA gyrase subunit B signature
5 15 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
181 196 PRINTS PR01159 DNA gyrase subunit B signature
181 196 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
220 242 PRINTS PR01159 DNA gyrase subunit B signature
220 242 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
360 374 PRINTS PR01159 DNA gyrase subunit B signature
360 374 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
374 394 PRINTS PR01159 DNA gyrase subunit B signature
374 394 InterPro IPR000565 DNA topoisomerase, type IIA, subunit B
221 392 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like
221 392 InterPro IPR020568 Ribosomal protein S5 domain 2-type fold
35 797 SMART SM00433 topII5
35 797 InterPro IPR001241 DNA topoisomerase, type IIA
704 803 FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B
31 175 SMART SM00387 HKATPase_4
31 175 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
391 591 FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B
2 803 PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B
592 682 Gene3D G3DSA:3.10.20.690 -
418 533 ProSiteProfiles PS50880 Toprim domain profile.
418 533 InterPro IPR006171 TOPRIM domain
4 220 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
4 220 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
703 803 Gene3D G3DSA:3.40.50.670 -
703 803 InterPro IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal
36 216 CDD cd16928 HATPase_GyrB-like
220 377 CDD cd00822 TopoII_Trans_DNA_gyrase
422 430 ProSitePatterns PS00177 DNA topoisomerase II signature.
422 430 InterPro IPR018522 DNA topoisomerase, type IIA, conserved site
221 396 Gene3D G3DSA:3.30.230.10 -
221 396 InterPro IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
2 804 Hamap MF_01898 DNA gyrase subunit B [gyrB].
2 804 InterPro IPR011557 DNA gyrase, subunit B
221 390 Pfam PF00204 DNA gyrase B
221 390 InterPro IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2
394 795 SUPERFAMILY SSF56719 Type II DNA topoisomerase
394 795 InterPro IPR013760 DNA topoisomerase, type IIA-like domain superfamily
32 174 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
32 174 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
580 600 Coils Coil Coil
2 219 FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B
419 531 Pfam PF01751 Toprim domain
419 531 InterPro IPR006171 TOPRIM domain

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

Download VMD script Full viewer

Loading 3D structure...

Drag to rotate — click the view, then scroll to zoom.

Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #3
0.793
Likely same site as P2Rank 1 1.4 Å 25 shared residues 96% of smaller site
Unusual size
Show in viewer
Surrounding area
Site 2 FPocket #18
0.395
Unusual size
Show in viewer
Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.859
Likely same site as FPocket 3 1.4 Å 25 shared residues 96% of smaller site
Show in viewer
Surrounding area
Site 2 P2Rank #2
0.55
Show in viewer
Surrounding area
Site 3 P2Rank #3
0.371
Show in viewer
Surrounding area
Site 4 P2Rank #4
0.173
Show in viewer
Surrounding area
Site 5 P2Rank #5
0.17
Show in viewer
Surrounding area
Residue sets
UniProt: Binding site:425-425
UniProt: Binding site:499-499
UniProt: Binding site:501-501
UniProt: Site:450-450 Interaction with DNA
UniProt: Site:453-453 Interaction with DNA
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GXR6
AlphaFold DB full sequence Viewing
ColabFold KP13_00051
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

238 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 188 records from similar proteins
Structural ligands 88 0 loaded crystals
Measured bioactivity 100 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
07N PDB via homolog 421.3 Da · LogP 3.13 · TPSA 98.3 Open detail RCSB PDB
087 PDB via homolog Detail RCSB PDB
08B PDB via homolog Detail RCSB PDB
0R0 PDB via homolog Detail RCSB PDB
0WT PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
07N RCSB PDB P0A0K8 421.3 Da LogP 3.13 TPSA 98.3 ✓ Ro5 ✓ Clean Cc1c(c(c([nH]1)C(=O)N[C@@H]2CCN(C[C@@H]2F)c3ncc…
087 RCSB PDB P0A0K8 430.7 Da LogP 3.18 TPSA 104.1 ✓ Ro5 ✓ Clean Cc1c(c(c([nH]1)C(=O)NC2CCN(CC2)c3cc(cc(n3)Cl)C(…
08B RCSB PDB P0A0K8 408.3 Da LogP 2.79 TPSA 104.2 ✓ Ro5 ✓ Clean Cc1c(cc([nH]1)C(=O)NC2CCN(CC2)c3c(cccn3)[N+](=O…
0R0 RCSB PDB P0AES6 119.1 Da LogP 1.26 TPSA 44.0 ✓ Ro5 ✓ Clean c1ccc(c(c1)C#N)O
0WT RCSB PDB Q839Z1 371.8 Da LogP 2.15 TPSA 105.8 ✓ Ro5 ✓ Clean CCc1c(c2c([nH]1)nc(nc2N3C[C@@H]4[C@H](C3)C4N)Oc…
1A0 RCSB PDB Q839Z1 426.9 Da LogP 3.20 TPSA 109.5 ✓ Ro5 ✓ Clean CCc1c(c2c([nH]1)nc(nc2N3CC[C@H](C3)N)Sc4cc5c(nc…
1A1 RCSB PDB P0AES6 363.4 Da LogP 2.68 TPSA 98.5 ✓ Ro5 ✓ Clean c1cc(cnc1)c2nc3c(nc(nc3s2)NC(=O)C4CC4)n5ccnc5
27K RCSB PDB P0AES6 194.2 Da LogP 2.35 TPSA 46.5 ✓ Ro5 ✓ Clean CCCCOC(=O)c1ccc(cc1)O
2CH RCSB PDB P0AES6 128.6 Da LogP 2.05 TPSA 20.2 ✓ Ro5 ✓ Clean c1ccc(c(c1)O)Cl
4CH RCSB PDB P0AES6 128.6 Da LogP 2.05 TPSA 20.2 ✓ Ro5 ✓ Clean c1cc(ccc1O)Cl
4CL RCSB PDB P0AES6 144.6 Da LogP 1.75 TPSA 40.5 ✓ Ro5 Alert c1cc(c(cc1Cl)O)O
4S4 RCSB PDB P0AES7 445.1 Da LogP 2.61 TPSA 111.3 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)NCC(=O)O)NC(=O)c2cc(c([nH]2)Br)Br
50M RCSB PDB P66937 374.4 Da LogP 1.33 TPSA 134.4 ✓ Ro5 ✓ Clean C[C@@H]1CN2c3ccc(cc3C[C@]4([C@H]2[C@@H](O1)C)C(…
54X RCSB PDB P0A0K8 234.3 Da LogP 2.71 TPSA 45.8 ✓ Ro5 ✓ Clean c1cc(sc1)c2csc3c2C(=O)N=CN3
55D RCSB PDB P0A0K8 212.3 Da LogP 1.59 TPSA 72.2 ✓ Ro5 ✓ Clean CCCC(=O)Nc1c(ccs1)C(=O)N
55G RCSB PDB P0A0K8 371.4 Da LogP 4.10 TPSA 87.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=CC(=O)Nc3c2c([nH]n3)c4cnc(s4)c5ccc…
55H RCSB PDB P0A0K8 295.3 Da LogP 2.44 TPSA 87.3 ✓ Ro5 ✓ Clean c1cc(cnc1)c2ncc(s2)c3c4c(n[nH]3)NC(=O)C=C4
57U RCSB PDB P0A0K8 266.3 Da LogP 1.77 TPSA 90.0 ✓ Ro5 ✓ Clean CCNC(=O)Nc1nc(c(s1)c2ccc[nH]2)CO
57V RCSB PDB P0A0K8 339.4 Da LogP 3.85 TPSA 82.7 ✓ Ro5 ✓ Clean CCNC(=O)Nc1nc(c(s1)c2ccc[nH]2)/C=C/c3cccnc3
57W RCSB PDB P0A0K8 358.4 Da LogP 3.62 TPSA 84.7 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cn(c2c1ncc(c2)c3cccnc3)c4ccccn4
57X RCSB PDB P0A0K8 337.4 Da LogP 3.32 TPSA 76.5 ✓ Ro5 Alert CCCN1c2c(c(n[nH]2)c3cnc(s3)c4cccnc4)C=CC1=O
57Y RCSB PDB P0A0K8 396.4 Da LogP 3.81 TPSA 132.2 ✓ Ro5 ✓ Clean CCCc1c(ccc2c1n[nH]c2c3cnc(s3)c4cc(c(nc4)C(=O)O)…
6EJ RCSB PDB P66937 451.5 Da LogP 2.05 TPSA 81.5 ✓ Ro5 ✓ Clean c1cc(c2c3c1C=CC(=O)N3C[C@H]2CN4CCC(CC4)NCc5cc6c…
883 RCSB PDB Q6GKU0 377.4 Da LogP 3.36 TPSA 108.5 ✓ Ro5 ✓ Clean CCNC(=O)Nc1[nH]c2c(cc(cc2n1)c3cc(cnc3)F)c4ncccn4
8H8 RCSB PDB P0AES6 137.1 Da LogP 1.40 TPSA 44.0 ✓ Ro5 ✓ Clean c1cc(c(cc1O)F)C#N
920 RCSB PDB Q839Z1 448.5 Da LogP 3.36 TPSA 117.9 ✓ Ro5 ✓ Clean Cc1ncc(cn1)Oc2nc3c(c4cc(cc(c4[nH]3)NC)F)c(n2)N5…
94H RCSB PDB P66937 362.5 Da LogP 3.72 TPSA 83.8 ✓ Ro5 ✓ Clean c1ccc(cc1)[C@H](CN)NC(=O)c2cc(cs2)c3c[nH]c4c3cc…
94K RCSB PDB P66937 370.9 Da LogP 4.81 TPSA 55.1 ✓ Ro5 ✓ Clean Cc1c(cc(s1)c2ccccc2Cl)C(=O)N[C@@H](CN)c3ccccc3
9JG RCSB PDB P0AES7 403.4 Da LogP 3.30 TPSA 105.2 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc2c(ccc(c2cn1)CNC(=O)OCC#C)c3ccncc3
9JN RCSB PDB P66937 362.5 Da LogP 3.72 TPSA 83.8 ✓ Ro5 ✓ Clean c1ccc(cc1)[C@@H](CN)NC(=O)c2cc(cs2)c3c[nH]c4c3c…
A8K RCSB PDB P0AES6 218.3 Da LogP 3.25 TPSA 40.5 ✓ Ro5 ✓ Clean c1cc(ccc1O)Sc2ccc(cc2)O
ANP RCSB PDB P0AES6 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
AX7 RCSB PDB P0AES6 133.2 Da LogP 1.15 TPSA 54.7 ✓ Ro5 ✓ Clean c1ccc2c(c1)[nH]c(n2)N
B46 RCSB PDB C3SLN3 422.5 Da LogP 3.44 TPSA 96.0 ✓ Ro5 ✓ Clean C#CCOC(=O)NCc1cc([nH]n1)c2c(nc(s2)c3cccnc3)N4CC…
B47 RCSB PDB P0A0K8 413.5 Da LogP 3.02 TPSA 103.4 ✓ Ro5 ✓ Clean COC(=O)NCc1cc([nH]n1)c2c(nc(s2)c3ccccc3)N4CCC(C…
B48 RCSB PDB P0A0K8 293.4 Da LogP 4.29 TPSA 41.6 ✓ Ro5 ✓ Clean Cc1c(sc(n1)c2cccs2)c3cc(n[nH]3)SC
BEF RCSB PDB P0AES6 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
BHW RCSB PDB P0AES6 1110.1 Da LogP 5.57 TPSA 354.9 4 viol. ✓ Clean Cc1ccc([nH]1)C(=O)O[C@H]2[C@H]([C@@H](OC([C@@H]…
BZ2 RCSB PDB P0AES6 162.1 Da LogP 2.13 TPSA 50.4 ✓ Ro5 ✓ Clean c1ccc2c(c1)cc(o2)C(=O)O
CJC RCSB PDB Q839Z1 442.9 Da LogP 2.49 TPSA 129.5 ✓ Ro5 ✓ Clean CCc1c(c2c([nH]1)nc(nc2N3CC[C@H](C3)N)Sc4cc5c(nc…
CWE RCSB PDB P0AES6 272.3 Da LogP 2.51 TPSA 87.0 ✓ Ro5 ✓ Clean c1cc(ccc1[C@H]2CC(=O)c3c(cc(cc3O2)O)O)O
CWW RCSB PDB P0AES6 430.3 Da LogP 2.82 TPSA 113.8 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc(c(cn1)C(=O)Nc2cccnc2)n3cc(cn3)Br
CZ5 RCSB PDB P0AES6 351.4 Da LogP 2.06 TPSA 113.8 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc(c(cn1)C(=O)Nc2cccnc2)n3cccn3
D0H RCSB PDB P0AES6 403.5 Da LogP 4.84 TPSA 95.2 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc(c(cn1)C(=O)Nc2cccc(c2)C)Nc3cccc(c…
D0K RCSB PDB P0AES6 406.4 Da LogP 3.62 TPSA 117.3 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc(c(cn1)C(=O)Nc2cccnc2)Nc3ccc(cc3)OC
DG RCSB PDB P0A0K8 347.2 Da LogP -1.54 TPSA 185.8 ✓ Ro5 ✓ Clean c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N…
DOO RCSB PDB P0AES6 434.5 Da LogP 2.98 TPSA 103.9 ✓ Ro5 ✓ Clean Cc1ncc(cn1)Oc2nc3c(c4cc(cc(c4[nH]3)NC)F)c(n2)N5…
DT RCSB PDB P66937 322.2 Da LogP -1.40 TPSA 151.1 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O…
DU5 RCSB PDB P66937 374.5 Da LogP 3.18 TPSA 48.5 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)NCCCN2CCN(CC2)c3c4ccccc4ccn3
E0F RCSB PDB P0AES6 389.5 Da LogP 4.54 TPSA 65.2 ✓ Ro5 ✓ Clean CN(Cc1ccccc1NC(=O)C2=Cc3ccccc3NC2=O)C4CCCCC4
E0L RCSB PDB P0AES6 337.3 Da LogP 2.52 TPSA 111.3 ✓ Ro5 ✓ Clean CNc1cccc2c1NC(=O)C(=C2)C(=O)Nc3cccc(c3)C(=O)O
E0R RCSB PDB P0AES6 337.3 Da LogP 2.52 TPSA 111.3 ✓ Ro5 ✓ Clean CNc1cccc2c1NC(=O)C(=C2)C(=O)Nc3ccc(cc3)C(=O)O
E0U RCSB PDB P0AES6 351.4 Da LogP 2.45 TPSA 111.3 ✓ Ro5 ✓ Clean CNc1cccc2c1NC(=O)C(=C2)C(=O)Nc3cccc(c3)CC(=O)O
E32 RCSB PDB P66937 327.4 Da LogP 1.66 TPSA 68.6 ✓ Ro5 ✓ Clean c1cn-2c(n1)C(=O)N(c3c2cc(c(c3)N4CC[C@@H](C4)N)F…
E3E RCSB PDB P66937 320.3 Da LogP 3.19 TPSA 52.2 ✓ Ro5 ✓ Clean c1cnccc1c2cc3c(cc2F)-n4ccnc4C(=O)N3C5CC5
EVO RCSB PDB P0A0K8 222.2 Da LogP 2.57 TPSA 42.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)/C(=C\c3cccnc3)/C(=O)N2
EVP RCSB PDB P66937 588.6 Da LogP 1.34 TPSA 160.8 2 viol. ✓ Clean C[C@@H]1OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](…
EZ6 RCSB PDB Q9I7C2 511.4 Da LogP 4.67 TPSA 121.6 1 viol. ✓ Clean CNc1cc(cc2c1[nH]c3c2c(c(cn3)c4cnc(nc4)C5(CC5)C(…
EZ9 RCSB PDB Q9I7C2 557.5 Da LogP 5.44 TPSA 130.8 2 viol. ✓ Clean CCNc1cc(cc2c1[nH]c3c2c(c(cn3)c4cnc(nc4)OCC(C)(C…
FKR RCSB PDB P0AES6 355.3 Da LogP 2.66 TPSA 111.3 ✓ Ro5 ✓ Clean CNc1cc(cc2c1NC(=O)C(=C2)C(=O)Nc3ccc(cc3)C(=O)O)F
FKU RCSB PDB P0AES6 427.4 Da LogP 2.42 TPSA 149.3 1 viol. ✓ Clean CNc1cc(cc2c1NC(=O)C(=C2NCCCN)C(=O)Nc3ccc(cc3)C(…
G3Z RCSB PDB P0AES7 384.4 Da LogP 4.58 TPSA 91.8 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc2c(ccc(c2cn1)Nc3cccnc3)c4ccncc4
HE9 RCSB PDB P0AES6 168.1 Da LogP 0.88 TPSA 66.8 ✓ Ro5 Alert COC(=O)c1ccc(c(c1)O)O
HF6 RCSB PDB P0AES6 178.2 Da LogP 1.58 TPSA 46.5 ✓ Ro5 ✓ Clean COC(=O)/C=C/c1ccc(cc1)O
HF9 RCSB PDB P0AES6 168.1 Da LogP 0.88 TPSA 66.8 ✓ Ro5 ✓ Clean COC(=O)c1ccc(cc1O)O
HFC RCSB PDB P0AES6 178.1 Da LogP 1.20 TPSA 70.7 ✓ Ro5 Alert c1c2c(cc(c1O)O)OC(=O)C=C2
HFO RCSB PDB P0AES6 152.1 Da LogP 1.30 TPSA 57.5 ✓ Ro5 Alert CC(=O)c1ccc(c(c1)O)O
HTT RCSB PDB Q839Z1 444.0 Da LogP 3.52 TPSA 107.2 ✓ Ro5 ✓ Clean CCc1c(c2c([nH]1)nc(nc2N3CC[C@H](C3)N)Sc4cc5c(nc…
HX3 RCSB PDB P0AES6 177.0 Da LogP 2.28 TPSA 38.0 ✓ Ro5 ✓ Clean c1cc(c(cc1NN)Cl)Cl
HX4 RCSB PDB P0AES6 159.2 Da LogP 1.66 TPSA 54.7 ✓ Ro5 ✓ Clean c1ccc(cc1)c2cc(n[nH]2)N
HX5 RCSB PDB P0AES6 195.1 Da LogP 2.51 TPSA 25.8 ✓ Ro5 ✓ Clean CSc1nc(cc(n1)Cl)Cl
HX8 RCSB PDB P0AES6 186.2 Da LogP 3.18 TPSA 29.5 ✓ Ro5 ✓ Clean c1ccc(cc1)Oc2ccc(cc2)O
JHN RCSB PDB P0AES6 448.5 Da LogP 1.09 TPSA 94.3 ✓ Ro5 ✓ Clean c1c2c(cnc1CNC3CCN(CC3)C[C@@H]4CN5C(=O)C=CC6=C5N…
JK8 RCSB PDB P0A0K8 364.8 Da LogP 5.23 TPSA 61.3 1 viol. ✓ Clean c1ccc(cc1)[C@H](CN)Oc2c3cc(ccc3on2)c4ccccc4Cl
MFX RCSB PDB P66937 401.4 Da LogP 2.37 TPSA 83.8 ✓ Ro5 ✓ Clean COc1c2c(cc(c1N3C[C@@H]4CCCN[C@@H]4C3)F)C(=O)C(=…
MJU RCSB PDB Q839Z1 414.5 Da LogP 3.14 TPSA 109.5 ✓ Ro5 ✓ Clean c1ccc2c(c1)c3c([nH]2)nc(nc3N4CC[C@@H](C4)N)Sc5c…
MPB RCSB PDB P0AES6 152.1 Da LogP 1.18 TPSA 46.5 ✓ Ro5 ✓ Clean COC(=O)c1ccc(cc1)O
N1N RCSB PDB P0A0K8 476.3 Da LogP 5.77 TPSA 104.3 1 viol. ✓ Clean Cc1c(c(c([nH]1)C(=O)Nc2nc3c(cc(cc3s2)C(=O)O)OCc…
NPO RCSB PDB P0AES6 139.1 Da LogP 1.30 TPSA 63.4 ✓ Ro5 ✓ Clean c1cc(ccc1[N+](=O)[O-])O
NWK RCSB PDB P0A0K8 499.4 Da LogP 3.90 TPSA 116.8 ✓ Ro5 ✓ Clean Cc1c(c(c([nH]1)C(=O)Nc2nc3c(cc(cc3s2)C(=O)O)OCC…
O54 RCSB PDB P0AES7 320.4 Da LogP 4.06 TPSA 66.9 ✓ Ro5 ✓ Clean CCNC(=O)Nc1cc2c(ccc(c2cn1)C)c3ccnc(c3)C
OHB RCSB PDB P0AES6 137.1 Da LogP 0.49 TPSA 63.3 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)N)O
ON2 RCSB PDB P0AES6 412.3 Da LogP 3.78 TPSA 112.9 ✓ Ro5 ✓ Clean Cc1c(c(c([nH]1)C(=O)Nc2nc3ccc(cc3s2)NC(=O)CCN)C…
Q52 RCSB PDB P0A0K8 410.9 Da LogP 4.09 TPSA 50.3 ✓ Ro5 ✓ Clean COc1ccc2c(n1)c(ccn2)CCN3CCC(CC3)NCc4ccc(cc4)Cl
RLI RCSB PDB P0AES6 388.5 Da LogP 4.37 TPSA 104.2 ✓ Ro5 ✓ Clean CCC(=O)Nc1nc(c(s1)c2csc(n2)Nc3ccc(cc3)C(=O)O)C
SUY RCSB PDB Q839Z1 387.9 Da LogP 2.51 TPSA 96.6 ✓ Ro5 ✓ Clean CCc1c(c2c([nH]1)nc(nc2N3C[C@@H]4[C@H](C3)C4N)Sc…
TBU RCSB PDB Q839Z1 74.1 Da LogP 0.78 TPSA 20.2 ✓ Ro5 ✓ Clean CC(C)(C)O
XAM RCSB PDB P0A0K8 939.9 Da LogP 4.17 TPSA 258.5 3 viol. ✓ Clean Cc1c(c(c([nH]1)C(=O)N[C@@H](C)[C@@]2(C[C@@H](O[…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.